Factsheet for Solyc01g107940.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400079217	Potato	cytosol	13.3	94.95
Solyc01g107930.2.1	Tomato	nucleus	76.1	74.93
Solyc10g050170.1.1	Tomato	mitochondrion, nucleus	54.03	52.62
Zm00001d026446_P001	Maize	cytosol	11.88	45.65
VIT_03s0063g00160.t01	Wine grape	nucleus	41.02	39.51
KRH50319	Soybean	nucleus	34.65	34.27
Bra015221.1-P	Field mustard	nucleus	27.86	33.0
KRH70661	Soybean	mitochondrion, nucleus	33.52	32.51
CDY37230	Canola	nucleus	26.73	32.09
CDY62314	Canola	nucleus	26.73	31.93
Bra039842.1-P	Field mustard	nucleus	26.87	31.83
GSMUA_Achr8P15680_001	Banana	nucleus	31.82	31.25
Solyc12g088740.1.1	Tomato	nucleus	30.55	31.17
AT4G34040.1	Thale cress	nucleus	29.14	30.93
Solyc04g078680.2.1	Tomato	nucleus	31.54	30.89
GSMUA_Achr9P11290_001	Banana	nucleus	30.41	30.85
Zm00001d002080_P002	Maize	nucleus	25.88	27.6
HORVU2Hr1G113970.2	Barley	cytosol, nucleus	22.35	27.34
Zm00001d026445_P001	Maize	nucleus	25.32	27.33
AT2G15530.4	Thale cress	nucleus	30.13	27.31
EES11547	Sorghum	nucleus	25.18	26.97
TraesCS2A01G514400.3	Wheat	nucleus	25.18	26.61
HORVU2Hr1G113930.2	Barley	nucleus	24.61	26.61
Os04t0648800-01	Rice	nucleus	25.04	26.54
TraesCS2D01G516000.1	Wheat	nucleus	24.61	26.01
TraesCS2B01G542200.2	Wheat	nucleus	24.61	25.97
Solyc12g010500.1.1	Tomato	nucleus	6.51	25.7
Zm00001d025027_P002	Maize	nucleus	24.05	24.43
EES10483	Sorghum	nucleus	23.62	23.99
Zm00001d004300_P003	Maize	nucleus	22.91	23.34
Solyc03g118840.2.1	Tomato	nucleus	12.02	21.96
Os04t0185500-01	Rice	nucleus	21.78	21.72
Solyc12g040390.1.1	Tomato	nucleus, plastid	9.34	21.64
Solyc09g007530.2.1	Tomato	nucleus	16.55	21.59
HORVU2Hr1G003340.5	Barley	nucleus	21.5	21.53
Solyc03g026150.2.1	Tomato	nucleus	7.21	21.52
TraesCS2A01G022100.1	Wheat	nucleus	21.22	21.4
TraesCS2D01G022900.1	Wheat	nucleus	21.22	21.4
Solyc08g006460.2.1	Tomato	nucleus	15.98	21.28
TraesCS2B01G030700.1	Wheat	nucleus	20.93	21.11
Solyc12g096420.1.1	Tomato	nucleus	16.12	20.69
Solyc12g019190.1.1	Tomato	mitochondrion	6.36	20.45
Solyc10g007140.2.1	Tomato	nucleus	14.85	20.23
Solyc12g019200.1.1	Tomato	mitochondrion	6.22	20.0
Solyc12g014070.1.1	Tomato	nucleus	15.13	20.0
Solyc11g062260.1.1	Tomato	nucleus	6.65	19.11
Solyc09g007620.1.1	Tomato	nucleus	4.24	17.14
Solyc05g008840.1.1	Tomato	nucleus, plastid	5.23	16.82
Solyc07g062720.1.1	Tomato	nucleus	14.43	13.16
Solyc01g087060.2.1	Tomato	nucleus	6.36	12.16
Solyc02g005480.2.1	Tomato	nucleus	4.24	11.19

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
GO:GO:0043161	GO:GO:0061630	InterPro:IPR001841	InterPro:IPR013083	UniProt:K4B310	PFAM:PF13639
PFscan:PS50089	PANTHER:PTHR14155	PANTHER:PTHR14155:SF127	SMART:SM00184	SUPFAM:SSF57850	EnsemblPlantsGene:Solyc01g107940.2
EnsemblPlants:Solyc01g107940.2.1	UniParc:UPI000276804F	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

No Description!

Coordinates

chr1:+:95321169..95325637

Molecular Weight (calculated)

76032.5 Da

IEP (calculated)

7.164

GRAVY (calculated)

-0.614

Length

707 amino acids

Sequence
(BLAST)

001: MQGNRSILDS IPETTDLNQG SVSSNASGDP TALWNNFLNP VEDRLSNSML SPARENRRRA NGISYTTQNC SARDRGESSS SANFHEIGHS SHLKIGHDWP
101: SSSSNHVLTN PKSEERRFGP STVLYPESST SGYAGSHLIG SHPVLPNLAL AQSPANGNLS GIYNNGDTRL VMRPSVSSTV YTSSSRWEAE RPVSGVSYNA
201: GTSSGSSSYW TRSPDISGSS MGTRGISCKR KVLEGSSGQS CGRSSSSNTQ PVNIIAHNFP SHYDASSNLN ISPASASVQN TYHLENLYPR NMVGTRGGAS
301: GVAETSARNS GSGRNLGTDL GHSSVGSTLV MPRPISESNY LGPRQPISQP MNAGNSGSHS GIIHISGVPS GLHPVPWNIS SNSRGGSSSS SNVVSADRYA
401: ALQDDANIGS SLRNNGEPLP FVPVPGTGNI VQNTTNWSLA TSNGSYSRNT PSSSALSSGP SMQTFPTAWT PYQNLASSST RSSSEISPWT LLPTVESESG
501: SQTGHFPLLS SAASPVEAAE ISLQSSSRRN HRNHLISSLM ADFPSNDVDG WHGFVSDIEG RHRMVQENRQ VLHAMQRGEN RRSEDYMMLD PYVNGVAELH
601: DRHRGMRLDV DNMSYEELLA LEERIGNVNT GLSEETILGR MKERKHEPVY GGSSSNTEPC CICREEYTSG DYMGILDCGH EFHSSCIKQW LRLKNVCPIC
701: KNTALKK

Best Arabidopsis Sequence Match ( AT2G15530.5 )
(BLAST)

001: MNPMQGPRSI GGSSTEVNQV DGESIYCTET SLNTMLNPAD TGFPNNSTPS GRPTYASSSS HAAQDHTWWR FGESSSIPGP SDQVNSIGIK TSHQLPQDGT
101: HHFVGYGSEG RQTGLNGMMV DGGVHAGSHI RNVPSFLRGS SSNPMPQHVD MSMDMDSDNC NAQTSGVVIR HNSYGSSLGS SVQAAGESSS GPASPFGGWG
201: SSCKRKALEG SPSHYFSGET PNRIVQTENS ASHASLSQYG ASSSLSLATP SQSSPNVTNH FGRTEQMFGS GGGRAVAASA FHSTRNTDTL SRAGRRLNPR
301: QPQESVAFSV SHGGTSVRPT GSLQQNLPLN SPFVDPPDVR SSSITSGSNT GENQTNIVHL PALTRNIHQY AWDASFSSRA SNPSGIGMPA ERLGPQWETP
401: RSNQEQPLFA PATDMRQPVH DLWNFARGSP GSSVDSLFVP RAGPSSAIHT PQPNPTWIPP QNAPPHNPSR TSELSPWSLF PSIESPSASH GGPLPLLPAG
501: PSVSSNEVTM PSSSNSRSHR SRHRRSGLLL ERQNELLHLR HIGRSLAADG NGRNQIISEI RQVLHAMRRG ENLRVEDYMV FDPLIYQGMT DMHDRHREMR
601: LDVDNMSYEE LLALGERIGD VSTGLSEEVI LKAMKQHKHT SSSPSSVELH QNIEPCCICQ EEYVEGDNLG TLKCGHEFHK DCIKQWVMIK NLCPICKTEA
701: LKTP

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IIG9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.