Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G516000.1 | Wheat | nucleus | 96.56 | 96.56 |
| HORVU2Hr1G113930.2 | Barley | nucleus | 91.03 | 93.12 |
| HORVU2Hr1G113970.2 | Barley | cytosol, nucleus | 80.27 | 92.91 |
| TraesCS2B01G542200.2 | Wheat | nucleus | 91.48 | 91.34 |
| Os04t0648800-01 | Rice | nucleus | 73.09 | 73.31 |
| EES11547 | Sorghum | nucleus | 69.21 | 70.15 |
| Zm00001d002080_P002 | Maize | nucleus | 68.31 | 68.93 |
| Zm00001d026445_P001 | Maize | nucleus | 67.41 | 68.86 |
| PGSC0003DMT400079217 | Potato | cytosol | 9.87 | 66.67 |
| Zm00001d026446_P001 | Maize | cytosol | 18.09 | 65.76 |
| VIT_03s0063g00160.t01 | Wine grape | nucleus | 31.84 | 29.02 |
| Bra015221.1-P | Field mustard | nucleus | 25.41 | 28.48 |
| KRH50319 | Soybean | nucleus | 27.95 | 26.15 |
| CDY62314 | Canola | nucleus | 23.02 | 26.01 |
| AT4G34040.1 | Thale cress | nucleus | 25.86 | 25.98 |
| CDY37230 | Canola | nucleus | 22.72 | 25.81 |
| Bra039842.1-P | Field mustard | nucleus | 22.87 | 25.63 |
| Solyc10g050170.1.1 | Tomato | mitochondrion, nucleus | 27.5 | 25.34 |
| PGSC0003DMT400066252 | Potato | nucleus | 27.06 | 25.31 |
| KRH70661 | Soybean | mitochondrion, nucleus | 27.5 | 25.24 |
| Solyc01g107940.2.1 | Tomato | nucleus | 26.61 | 25.18 |
| Solyc01g107930.2.1 | Tomato | nucleus | 26.76 | 24.93 |
| TraesCS2A01G437200.1 | Wheat | nucleus | 13.45 | 24.39 |
| TraesCS2A01G022100.1 | Wheat | nucleus | 25.26 | 24.11 |
| TraesCS3A01G260500.1 | Wheat | nucleus | 12.41 | 24.06 |
| TraesCS5A01G312800.1 | Wheat | cytosol, nucleus, plastid | 5.98 | 23.39 |
| AT2G15530.4 | Thale cress | nucleus | 26.91 | 23.08 |
| TraesCS4A01G112900.1 | Wheat | nucleus | 8.07 | 21.6 |
| TraesCS1A01G373200.1 | Wheat | nucleus | 10.61 | 20.34 |
| TraesCS2A01G400200.1 | Wheat | nucleus | 7.47 | 19.76 |
| TraesCS1A01G107600.1 | Wheat | nucleus | 15.84 | 19.74 |
| TraesCS3A01G246900.3 | Wheat | nucleus | 15.55 | 19.73 |
| TraesCS3A01G103000.1 | Wheat | nucleus | 15.25 | 19.65 |
| TraesCS6A01G121400.2 | Wheat | nucleus | 16.29 | 18.7 |
| TraesCS7A01G271500.1 | Wheat | cytosol, mitochondrion, nucleus | 7.47 | 17.36 |
| TraesCS1A01G398300.8 | Wheat | cytosol | 13.3 | 16.51 |
| TraesCS7A01G054700.2 | Wheat | nucleus | 6.13 | 16.27 |
| TraesCS4A01G441400.1 | Wheat | nucleus | 5.98 | 16.0 |
| TraesCS5A01G325400.2 | Wheat | nucleus | 8.67 | 15.68 |
| TraesCS7A01G428300.2 | Wheat | nucleus | 11.51 | 13.25 |
Protein Annotations
| EnsemblPlants:TraesCS2A01G514400.3 | EnsemblPlantsGene:TraesCS2A01G514400 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR14155 | PANTHER:PTHR14155:SF464 | PFAM:PF13639 | PFscan:PS50089 | SEG:seg |
| SMART:SM00184 | SUPFAM:SSF57850 | TIGR:cd16481 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr2A:-:738985913..738989990
Molecular Weight (calculated)
72758.4 Da
IEP (calculated)
6.535
GRAVY (calculated)
-0.590
Length
669 amino acids
Sequence
(BLAST)
(BLAST)
001: MQGQRNSVEQ LSDVFGFDHG SGSGNPVMDQ QAYWNSMLGA AESQNLPGYE MNRGDGAIPY GSEAHQDGQF LGFWGSGEAS SSGSALNYGS SNAIKAEHLN
101: IGGGLRIGER RLGAEHNLSL DNVDINLNTS GHDLFGQSSN ANNASQASQQ HAGCSRTDAT AQATELRLHP YRTYGLDDEQ PEPFPSLNAF EHPLGNFSLM
201: PEDIDQRPGS SSLDGRRLAC KRKNIEGVHG QFSGGASTSF SHRNDNAFHS VPSSSFNPAP GPNVSSHNFL LAPSSIEEQL PNYGATTIMS SVSYNHPSGG
301: NNSSGNSQRS FRARTTTAQQ VSPYGVWPPS GSIRHPASYY HQPPAFQSAF DELEAAMPVV SGINLQYQHP GNVVPGIPQT AHRFAGHGAS SSRAGSLDNI
401: ILGREEVTGR NLVAPGFPSA APHAALDMRH LVPELSNWNS DNPGATIPGN VSSVSRANAS STISRPAGST SLTHQNLHRR HPRNLSEEIG RLSGALCGPQ
501: HPRLRSGFLL ERQGDGVWGV PLPMRNTREG RRLMEIRNAL EMIQRGENVR FEQSIFYGGV EIHDRHRDMR LDIDNMSYEE LLALEERIGN VNTGLTENDV
601: MKLLKQRKFS SWRLSSVEYE PCCICQEEYV DGDDLGTLHC GHDFHASCIR QWLVVKNLCP ICKSTALKT
101: IGGGLRIGER RLGAEHNLSL DNVDINLNTS GHDLFGQSSN ANNASQASQQ HAGCSRTDAT AQATELRLHP YRTYGLDDEQ PEPFPSLNAF EHPLGNFSLM
201: PEDIDQRPGS SSLDGRRLAC KRKNIEGVHG QFSGGASTSF SHRNDNAFHS VPSSSFNPAP GPNVSSHNFL LAPSSIEEQL PNYGATTIMS SVSYNHPSGG
301: NNSSGNSQRS FRARTTTAQQ VSPYGVWPPS GSIRHPASYY HQPPAFQSAF DELEAAMPVV SGINLQYQHP GNVVPGIPQT AHRFAGHGAS SSRAGSLDNI
401: ILGREEVTGR NLVAPGFPSA APHAALDMRH LVPELSNWNS DNPGATIPGN VSSVSRANAS STISRPAGST SLTHQNLHRR HPRNLSEEIG RLSGALCGPQ
501: HPRLRSGFLL ERQGDGVWGV PLPMRNTREG RRLMEIRNAL EMIQRGENVR FEQSIFYGGV EIHDRHRDMR LDIDNMSYEE LLALEERIGN VNTGLTENDV
601: MKLLKQRKFS SWRLSSVEYE PCCICQEEYV DGDDLGTLHC GHDFHASCIR QWLVVKNLCP ICKSTALKT
001: MNPMQGPRSI GGSSTEVNQV DGESIYCTET SLNTMLNPAD TGFPNNSTPS GRPTYASSSS HAAQDHTWWR FGESSSIPGP SDQVNSIGIK TSHQLPQDGT
101: HHFVGYGSEG RQTGLNGMMV DGGVHAGSHI RNVPSFLRGS SSNPMPQHVD MSMDMDSDNC NAQTSGVVIR HNSYGSSLGS SVQAAGESSS GPASPFGGWG
201: SSCKRKALEG SPSHYFSGET PNRIVQTENS ASHASLSQYG ASSSLSLATP SQSSPNVTNH FGRTEQMFGS GGGRAVAASA FHSTRNTDTL SRAGRRLNPR
301: QPQESVAFSV SHDPPDVRSS SITSGSNTGE NQTNIVHLPA LTRNIHQYAW DASFSSRASN PSGIGMPAER LGPQWETPRS NQEQPLFAPA TDMRQPVHDL
401: WNFARGSPGS SVDSLFVPRA GPSSAIHTPQ PNPTWIPPQN APPHNPSRTS ELSPWSLFPS IESPSASHGG PLPLLPAGPS VSSNEVTMPS SSNSRSHRSR
501: HRRSGLLLER QNELLHLRHI GRSLAADGNG RNQIISEIRQ VLHAMRRGEN LRVEDYMVFD PLIYQGMTDM HDRHREMRLD VDNMSYEELL ALGERIGDVS
601: TGLSEEVILK AMKQHKHTSS SPSSVELHQN IEPCCICQEE YVEGDNLGTL KCGHEFHKDC IKQWVMIKNL CPICKTEALK TP
101: HHFVGYGSEG RQTGLNGMMV DGGVHAGSHI RNVPSFLRGS SSNPMPQHVD MSMDMDSDNC NAQTSGVVIR HNSYGSSLGS SVQAAGESSS GPASPFGGWG
201: SSCKRKALEG SPSHYFSGET PNRIVQTENS ASHASLSQYG ASSSLSLATP SQSSPNVTNH FGRTEQMFGS GGGRAVAASA FHSTRNTDTL SRAGRRLNPR
301: QPQESVAFSV SHDPPDVRSS SITSGSNTGE NQTNIVHLPA LTRNIHQYAW DASFSSRASN PSGIGMPAER LGPQWETPRS NQEQPLFAPA TDMRQPVHDL
401: WNFARGSPGS SVDSLFVPRA GPSSAIHTPQ PNPTWIPPQN APPHNPSRTS ELSPWSLFPS IESPSASHGG PLPLLPAGPS VSSNEVTMPS SSNSRSHRSR
501: HRRSGLLLER QNELLHLRHI GRSLAADGNG RNQIISEIRQ VLHAMRRGEN LRVEDYMVFD PLIYQGMTDM HDRHREMRLD VDNMSYEELL ALGERIGDVS
601: TGLSEEVILK AMKQHKHTSS SPSSVELHQN IEPCCICQEE YVEGDNLGTL KCGHEFHKDC IKQWVMIKNL CPICKTEALK TP
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IIG9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.