Factsheet for TraesCS6A01G121400.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 2
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G149700.2	Wheat	nucleus	90.74	93.79
TraesCS6D01G111500.2	Wheat	nucleus	96.57	93.37
HORVU3Hr1G054920.1	Barley	cytosol	14.41	91.3
HORVU6Hr1G022370.10	Barley	mitochondrion	90.05	75.54
Zm00001d019616_P001	Maize	cytosol	14.58	65.89
Zm00001d015453_P001	Maize	cytosol	14.58	65.89
Zm00001d013776_P001	Maize	cytosol	14.58	65.89
EES04530	Sorghum	nucleus	51.97	58.49
Os02t0150700-01	Rice	extracellular	62.26	56.63
Zm00001d015289_P001	Maize	nucleus	54.03	55.65
TraesCS7A01G428300.2	Wheat	nucleus	45.8	45.96
CDX97032	Canola	plastid	24.87	43.28
CDY71882	Canola	plastid	25.56	42.57
GSMUA_Achr3P05160_001	Banana	nucleus	41.34	40.92
GSMUA_Achr6P03840_001	Banana	nucleus	24.7	38.81
CDX85750	Canola	nucleus	24.87	37.56
VIT_04s0008g02390.t01	Wine grape	nucleus	34.82	36.91
CDX95473	Canola	nucleus	28.13	35.34
KRH04957	Soybean	nucleus	31.56	34.59
Bra006070.1-P	Field mustard	nucleus	28.64	33.74
AT5G24870.2	Thale cress	nucleus	30.02	33.65
CDX88140	Canola	nucleus	27.79	33.61
CDX78393	Canola	nucleus	28.47	33.6
KRH52597	Soybean	nucleus	31.05	33.46
CDY68658	Canola	nucleus	26.76	33.26
KRH16134	Soybean	nucleus	31.56	33.15
CDY40109	Canola	nucleus	10.46	32.8
CDX97044	Canola	nucleus	28.64	32.75
CDX70363	Canola	nucleus	27.1	32.51
PGSC0003DMT400067670	Potato	nucleus	29.16	32.2
Solyc08g006460.2.1	Tomato	nucleus	28.99	31.83
Bra024009.1-P	Field mustard	nucleus	9.43	31.43
CDX69813	Canola	mitochondrion	28.64	31.33
Bra009015.1-P	Field mustard	plastid	28.47	31.14
GSMUA_Achr10P...	Banana	nucleus	26.76	30.83
Solyc12g096420.1.1	Tomato	nucleus	28.82	30.49
AT5G10650.2	Thale cress	nucleus	27.44	30.48
PGSC0003DMT400075959	Potato	nucleus	27.96	29.91
CDY13429	Canola	cytosol	12.86	29.07
KRH61936	Soybean	nucleus	27.44	28.73
TraesCS2A01G437200.1	Wheat	nucleus	17.15	27.1
Bra009800.1-P	Field mustard	nucleus	18.35	26.1
GSMUA_Achr7P15850_001	Banana	nucleus	28.3	25.38
TraesCS3A01G260500.1	Wheat	nucleus	14.58	24.64
TraesCS5A01G312800.1	Wheat	cytosol, nucleus, plastid	7.03	23.98
TraesCS1A01G373200.1	Wheat	nucleus	13.89	23.21
TraesCS4A01G441400.1	Wheat	nucleus	9.09	21.2
TraesCS7A01G054700.2	Wheat	nucleus	9.09	21.03
TraesCS7A01G271500.1	Wheat	cytosol, mitochondrion, nucleus	9.43	19.1
CDY63645	Canola	nucleus	14.92	18.83
Bra024007.1-P	Field mustard	nucleus	14.92	18.63
CDY13433	Canola	nucleus	14.75	18.45
TraesCS4A01G112900.1	Wheat	nucleus	7.89	18.4
AT4G31450.2	Thale cress	nucleus	15.61	18.31
TraesCS2A01G400200.1	Wheat	nucleus	7.72	17.79
TraesCS2A01G022100.1	Wheat	nucleus	20.07	16.69
TraesCS2A01G514400.3	Wheat	nucleus	18.7	16.29
TraesCS3A01G246900.3	Wheat	nucleus	14.24	15.75
TraesCS1A01G107600.1	Wheat	nucleus	14.07	15.27
TraesCS3A01G103000.1	Wheat	nucleus	13.38	15.03
TraesCS5A01G325400.2	Wheat	nucleus	9.43	14.86
TraesCS1A01G398300.8	Wheat	cytosol	13.21	14.29

Protein Annotations

EnsemblPlants:TraesCS6A01G121400.2	EnsemblPlantsGene:TraesCS6A01G121400	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR22937	PANTHER:PTHR22937:SF60	PFAM:PF13639	PFscan:PS50089	SEG:seg
SMART:SM00184	SUPFAM:SSF57850	TIGR:cd16454	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr6A:+:93798771..93801476

Molecular Weight (calculated)

65043.3 Da

IEP (calculated)

9.319

GRAVY (calculated)

-0.753

Length

583 amino acids

Sequence
(BLAST)

001: MEEYLNRRSK AAIGFLRRGS GINRSPEETT SQNTDVQGST SRVNPMKTRL ADYQERPRYL HGSYKYASSN VMSGSPSKFP KNFPLRKFGE EKRRQTLLEG
101: ADVAESSRRK SDAGCLEGSK KTIVENQSSD APQTGTEGLT AKDAELIAPD PEVSHPAGSS GMHAHTAESL VRSASLSSKT HRQKDKELNL GTARYSCSSS
201: FSNQPSIPRI PIAGAKPSYS LVSGEQRRGP RGLKNLGCTS VSDVLPSGCS SDSVRTRSFD AMRKRTSDGE SSSRSRVISD PSSLGHLHTI YPSINGPRIR
301: TTEESVRQQT LRSRSRNIQD SAVSVRTRRT FPRDTRFRMS VEREDAMLHL NESTAGNQQS VGADFSVEED SSESSIRPVS VELPHAIYSS SRQGSSTRTA
401: RRTSSSRFEQ SPPQTFRSLA RERGGHRRIN MEGIAEVLLV LERIEQEAEL TYEQQLRVLE TNLLLGAFAS HDQHSDMRMD IDNMSYEELL ALEERIGYVS
501: TALSEEQLAK CIRRRLYRPV AAKGNRSVID DIKCSICQEE FVKGEEVGRL RCEHQYHVCC IRQWLLQKNW CPVCKAPALP SLN

Best Arabidopsis Sequence Match ( AT5G24870.3 )
(BLAST)

001: MDGFKGKRTS RPIMPRKASG LVLHENMKKK DDKSVVPICS RIGCSSRVSS TKGDLIDHKA KATVSSFRSP LSGKETVGSS SRSMSGFGGT KKASKVIGRR
101: QLSSLLDMDS SESSSVNEDS PTSERSLPRG KTKESTISVH SESSVSGEVV TEAGSSSRGT GRSIHQRPDL VSRDARVSNS EQNARASVNK NGLRDLRNKS
201: GSDVLPSNST PTRKSNIFRK KTSDGESSSS SRGNKTEGSV VGGKNISSPQ GNGITMSEPR RNRNLPSVRD NSVVSSSTRR STGYYGRTGR AGAVATLQAP
301: RPPTRADLNP SRSAEASRSP LNSYSRPISS NGRLRSLMMP GSPSEAGLSR SLMNRDTFRR YNMNGVAEVL LALERIEQDE ELTYEQLAVL ETNLFLNGMS
401: SFHDQHRDMR LDIDNMSYEE LLALEEKMGT VSTALSEEAL LKSLKSSIYR PNDESDDICL NKDDDVKCSI CQEEYVDGDE VGTLPCQHKY HVSCAQQWLR
501: MKNWCPICKT SAESQPHPFS

Arabidopsis Description

At5g24870 [Source:UniProtKB/TrEMBL;Acc:Q8L775]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.