Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G054700.2 | Wheat | nucleus | 95.2 | 94.44 |
| HORVU7Hr1G009940.2 | Barley | nucleus | 85.6 | 89.92 |
| KXG19166 | Sorghum | nucleus | 60.8 | 55.88 |
| Os06t0125800-01 | Rice | nucleus | 56.8 | 54.41 |
| Zm00001d045517_P001 | Maize | mitochondrion, nucleus | 58.0 | 54.1 |
| TraesCS5A01G312800.1 | Wheat | cytosol, nucleus, plastid | 28.8 | 42.11 |
| TraesCS2A01G400200.1 | Wheat | nucleus | 35.2 | 34.78 |
| TraesCS4A01G112900.1 | Wheat | nucleus | 26.8 | 26.8 |
| TraesCS7A01G271500.1 | Wheat | cytosol, mitochondrion, nucleus | 23.6 | 20.49 |
| TraesCS5A01G325400.2 | Wheat | nucleus | 22.4 | 15.14 |
| TraesCS3A01G260500.1 | Wheat | nucleus | 18.8 | 13.62 |
| TraesCS2A01G437200.1 | Wheat | nucleus | 18.8 | 12.74 |
| TraesCS1A01G373200.1 | Wheat | nucleus | 17.2 | 12.32 |
| TraesCS6A01G121400.2 | Wheat | nucleus | 21.2 | 9.09 |
| TraesCS1A01G107600.1 | Wheat | nucleus | 18.0 | 8.38 |
| TraesCS3A01G246900.3 | Wheat | nucleus | 16.8 | 7.97 |
| TraesCS1A01G398300.8 | Wheat | cytosol | 16.8 | 7.79 |
| TraesCS3A01G103000.1 | Wheat | nucleus | 14.4 | 6.94 |
| TraesCS2A01G022100.1 | Wheat | nucleus | 18.4 | 6.56 |
| TraesCS7A01G428300.2 | Wheat | nucleus | 14.8 | 6.37 |
| TraesCS2A01G514400.3 | Wheat | nucleus | 16.0 | 5.98 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G441400.1 | EnsemblPlantsGene:TraesCS4A01G441400 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR14155 | PANTHER:PTHR14155:SF108 | PFAM:PF13639 | PFscan:PS50089 | SEG:seg |
| SMART:SM00184 | SUPFAM:SSF57850 | TIGR:cd16454 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr4A:+:709894624..709896089
Molecular Weight (calculated)
27637.0 Da
IEP (calculated)
3.986
GRAVY (calculated)
-0.810
Length
250 amino acids
Sequence
(BLAST)
(BLAST)
001: MATVGPPGAY RRITVHYSTA GDDVNHDDFL EYVIGDVLQH QEGLHQSFGT GAPGASWSMH CCHGESSRGT AAETSGSSEE QIAADLKYAR MLQEMEDLDV
101: DTPPNEDEQD DISCVPSPSD TDDDDDRGDE EEAAGQDDDD NDDTNDDVDP DNMTYEQGQE LVESVGNESR GLSDELLSYL VPWKYRSGSG FFSRRTNHDD
201: TCTVCLSAFR NRENIITLPC KHNYHASCIS SWLKINKTCP VCKYEVFGPS
101: DTPPNEDEQD DISCVPSPSD TDDDDDRGDE EEAAGQDDDD NDDTNDDVDP DNMTYEQGQE LVESVGNESR GLSDELLSYL VPWKYRSGSG FFSRRTNHDD
201: TCTVCLSAFR NRENIITLPC KHNYHASCIS SWLKINKTCP VCKYEVFGPS
001: MNGDNRPVED AHYTETGFPY AATGSYMDFY GGAAQGPLNY DHAATMHPQD NLYWTMNTNA YKFGFSGSDN ASFYGSYDMN DHLSRMSIGR TNWDYHPMVN
101: VADDPENTVA RSVQIGDTDE HSEAEECIAN EHDPDSPQVS WQDDIDPDTM TYEELVELGE AVGTESRGLS QELIETLPTK KYKFGSIFSR KRAGERCVIC
201: QLKYKIGERQ MNLPCKHVYH SECISKWLSI NKVCPVCNSE VFGEPSIH
101: VADDPENTVA RSVQIGDTDE HSEAEECIAN EHDPDSPQVS WQDDIDPDTM TYEELVELGE AVGTESRGLS QELIETLPTK KYKFGSIFSR KRAGERCVIC
201: QLKYKIGERQ MNLPCKHVYH SECISKWLSI NKVCPVCNSE VFGEPSIH
Arabidopsis Description
BBBB2 [Source:UniProtKB/TrEMBL;Acc:A0A178VG02]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.