Factsheet for TraesCS2A01G022100.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 2
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G022900.1	Wheat	nucleus	98.72	98.72
TraesCS2B01G030700.1	Wheat	nucleus	97.43	97.43
HORVU2Hr1G003340.5	Barley	nucleus	94.01	93.34
Os04t0185500-01	Rice	nucleus	67.76	67.0
EES10483	Sorghum	nucleus	63.2	63.65
Zm00001d004300_P003	Maize	nucleus	61.48	62.1
Zm00001d025027_P002	Maize	nucleus	60.77	61.21
PGSC0003DMT400079217	Potato	cytosol	8.56	60.61
GSMUA_Achr4P06090_001	Banana	cytosol	12.13	57.82
GSMUA_Achr4P12850_001	Banana	nucleus	19.83	30.48
Bra015221.1-P	Field mustard	nucleus	23.54	27.64
CDY62314	Canola	nucleus	22.11	26.18
CDY37230	Canola	nucleus	21.83	25.98
Bra039842.1-P	Field mustard	nucleus	21.97	25.8
AT4G34040.1	Thale cress	nucleus	24.25	25.53
GSMUA_Achr9P22530_001	Banana	nucleus	23.4	25.47
TraesCS2A01G514400.3	Wheat	nucleus	24.11	25.26
VIT_03s0063g00160.t01	Wine grape	nucleus	26.39	25.2
TraesCS2A01G437200.1	Wheat	nucleus	12.98	24.66
TraesCS3A01G260500.1	Wheat	nucleus	12.13	24.64
TraesCS5A01G312800.1	Wheat	cytosol, nucleus, plastid	5.99	24.56
KRH50319	Soybean	nucleus	23.11	22.66
PGSC0003DMT400066252	Potato	nucleus	22.82	22.38
KRH70661	Soybean	mitochondrion, nucleus	22.82	21.95
AT2G15530.4	Thale cress	nucleus	24.11	21.67
TraesCS1A01G373200.1	Wheat	nucleus	10.7	21.49
Solyc01g107930.2.1	Tomato	nucleus	21.83	21.31
Solyc01g107940.2.1	Tomato	nucleus	21.4	21.22
TraesCS4A01G112900.1	Wheat	nucleus	7.42	20.8
Solyc10g050170.1.1	Tomato	mitochondrion, nucleus	21.26	20.52
TraesCS6A01G121400.2	Wheat	nucleus	16.69	20.07
TraesCS2A01G400200.1	Wheat	nucleus	7.13	19.76
TraesCS3A01G246900.3	Wheat	nucleus	14.27	18.98
TraesCS4A01G441400.1	Wheat	nucleus	6.56	18.4
TraesCS3A01G103000.1	Wheat	nucleus	13.41	18.11
TraesCS1A01G107600.1	Wheat	nucleus	13.84	18.06
TraesCS7A01G054700.2	Wheat	nucleus	6.42	17.86
TraesCS7A01G271500.1	Wheat	cytosol, mitochondrion, nucleus	7.28	17.71
TraesCS1A01G398300.8	Wheat	cytosol	12.55	16.33
TraesCS5A01G325400.2	Wheat	nucleus	8.42	15.95
TraesCS7A01G428300.2	Wheat	nucleus	13.12	15.83

Protein Annotations

EnsemblPlants:TraesCS2A01G022100.1	EnsemblPlantsGene:TraesCS2A01G022100	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR22937	PANTHER:PTHR22937:SF94	PFAM:PF13639	PFscan:PS50089	SEG:seg
SMART:SM00184	SUPFAM:SSF57850	TIGR:cd16481	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr2A:-:10596614..10600905

Molecular Weight (calculated)

76234.1 Da

IEP (calculated)

6.734

GRAVY (calculated)

-0.649

Length

701 amino acids

Sequence
(BLAST)

001: MQHNRVTMLS SSETCHLGSS SNNQAIDQQN PAVDEHNLLP DTLESENYPH YVLNSHEVGM PSGGMIGQQN TSLSLWDSPG SSSAGFLADH DSLLQAKREH
101: FAPALSIGGP LIIEGRRRES SSSLPSHNLN IDLNINQADQ FETGNVDMVQ SNGHSGMNTY PPNRGLSTTE NVLRREISPG AIRSSLHSAN FFDGTAGQET
201: GGSSSHTVNH FRSSIKRKNV AGSLGESSAN GSSRNHCQNN DMLLPSLSSH ESTANLNMTS VNYGFSYPPM EQLDQNTDTS DDDIFSDPYT LSGHLHESQR
301: FLRNTRMRIS ANEYEQSLSN LLPEESFRCS AHQPARQQSS FTPVQPRGVS SSASSQNRPH VPAVAQFSQS LQRHPSNGNF GSRPGSSADT INPTPASQDP
401: GSSLARSNLP EPFMLGPSLF TTDSTNLLSA PGSRSNQQNP GSSSTLRAAA NVGPQQVPGL NSSQPSSAAR GSADVPRRAS LAASVSHSRS PSIALQHRGH
501: SSSSHEIRNH QPGSSARASL QHYSRAVPPS IDRQNPGYLD LQSFMQSIAA SREGSRTVSE LRNVVEQIRQ GRSAARLEDF LVDRQLIRRA SLVDRHREMR
601: LDVDNMSYEE LLALGERIGH VSTGLSEEKI MSGLKQWKYL HIPLEEPATV IEPCCICQED YADGEDMGRV ECGHYFHTAC IKQWLVIKNT CPICKKAALG
701: T

Best Arabidopsis Sequence Match ( AT2G15530.1 )
(BLAST)

001: MNPMQGPRSI GGSSTEVNQV DGESIYCTET SLNTMLNPAD TGFPNNSTPS GRPTYASSSS HAAQDHTWWR FGESSSIPGP SDQVNSIGIK TSHQLPQDGT
101: HHFVGYGSEG RQTGLNGMMV DGGVHAGSHI RNVPSFLRGS SSNPMPQHVD MSMDMDSDNC NAQTSGVVIR HNSYGSSLGS SVQAAGESSS GPASPFGGWG
201: SSCKRKALEG SPSHYFSGET PNRIVQTENS ASHASLSQYG ASSSLSLATP SQSSPNVTNH FGRTEQMFGS GGGRAVAASA FHSTRNTDTL SRAGRRLNPR
301: QPQESVAFSV SHGGTSVRPT GSLQQNLPLN SPFVDPPDVR SSSITSGSNT GENQTNIVHL PALTRNIHQY AWDASFSSRA SNPSGIGMPA ERLGPQWETP
401: RSNQEQPLFA PATDMRQPVH DLWNFARGSP GSSVDSLFVP RAGPSSAIHT PQPNPTWIPP QNAPPHNPSR TSELSPWSLF PSIESPSASH GGPLPLLPAG
501: PSVSSNEVTM PSSSNSRSHR SRHRRSGLLL ERQNELLHLR HIGRSLAADG NGRNQIISEI RQVLHAMRRG ENLRVEDYMV FDPLIYQGMT DMHDRHREMR
601: LDVDNMSYEE LLALGERIGD VSTGLSEEVI LKAMKQHKHT SSSPSSVELH QNIEPCCICQ EEYVEGDNLG TLKCGHEFHK DCIKQWVMIK NLCPICKTEA
701: LKTP

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IIG9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.