Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_AchrUn_... | Banana | nucleus | 38.1 | 50.0 |
| GSMUA_Achr4P03550_001 | Banana | mitochondrion | 11.56 | 28.33 |
| GSMUA_Achr4P12850_001 | Banana | nucleus | 82.99 | 26.75 |
| GSMUA_AchrUn_... | Banana | nucleus | 40.82 | 26.67 |
| GSMUA_Achr4P11130_001 | Banana | nucleus, plastid | 45.58 | 20.06 |
| GSMUA_Achr9P21480_001 | Banana | plastid | 46.26 | 20.0 |
| GSMUA_Achr9P22530_001 | Banana | nucleus | 85.71 | 19.57 |
| GSMUA_Achr3P29390_001 | Banana | golgi, plastid | 45.58 | 17.63 |
| GSMUA_Achr1P23200_001 | Banana | nucleus | 42.18 | 17.22 |
| GSMUA_Achr8P31290_001 | Banana | nucleus | 29.25 | 17.0 |
| GSMUA_Achr6P03840_001 | Banana | nucleus | 42.18 | 16.71 |
| GSMUA_Achr4P13930_001 | Banana | nucleus | 27.21 | 16.13 |
| Zm00001d025027_P002 | Maize | nucleus | 69.39 | 14.66 |
| Zm00001d004300_P003 | Maize | nucleus | 67.35 | 14.27 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, peroxisome | 49.66 | 14.26 |
| GSMUA_Achr4P04290_001 | Banana | nucleus | 21.09 | 13.96 |
| GSMUA_Achr3P13740_001 | Banana | nucleus | 46.26 | 13.88 |
| GSMUA_Achr4P05140_001 | Banana | nucleus | 27.89 | 13.85 |
| GSMUA_Achr3P26700_001 | Banana | nucleus | 27.21 | 13.7 |
| Os04t0185500-01 | Rice | nucleus | 65.99 | 13.68 |
| EES10483 | Sorghum | nucleus | 64.63 | 13.65 |
| GSMUA_Achr9P24150_001 | Banana | nucleus | 27.21 | 13.29 |
| GSMUA_Achr9P11290_001 | Banana | nucleus | 60.54 | 12.77 |
| GSMUA_Achr10P... | Banana | nucleus | 43.54 | 12.65 |
| GSMUA_Achr1P23500_001 | Banana | nucleus | 42.86 | 12.26 |
| GSMUA_Achr4P03540_001 | Banana | nucleus | 16.33 | 12.18 |
| TraesCS2A01G022100.1 | Wheat | nucleus | 57.82 | 12.13 |
| TraesCS2B01G030700.1 | Wheat | nucleus | 57.82 | 12.13 |
| TraesCS2D01G022900.1 | Wheat | nucleus | 57.82 | 12.13 |
| GSMUA_Achr8P15680_001 | Banana | nucleus | 59.18 | 12.08 |
| GSMUA_Achr4P04180_001 | Banana | mitochondrion, nucleus, peroxisome, plastid | 25.17 | 12.05 |
| HORVU2Hr1G003340.5 | Barley | nucleus | 57.82 | 12.04 |
| KRH50319 | Soybean | nucleus | 58.5 | 12.03 |
| VIT_03s0063g00160.t01 | Wine grape | nucleus | 59.86 | 11.99 |
| KRH70661 | Soybean | mitochondrion, nucleus | 56.46 | 11.39 |
| GSMUA_Achr3P05160_001 | Banana | nucleus | 45.58 | 11.38 |
| GSMUA_Achr4P30500_001 | Banana | nucleus | 25.85 | 11.21 |
| GSMUA_Achr5P08460_001 | Banana | nucleus | 39.46 | 10.1 |
| GSMUA_Achr7P15850_001 | Banana | nucleus | 42.86 | 9.69 |
| GSMUA_Achr4P06080_001 | Banana | nucleus | 21.77 | 6.91 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr4P06090_001 | EnsemblPlants:GSMUA_Achr4T06090_001 | EnsemblPlantsGene:GSMUA_Achr4G06090_001 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR14155 | PANTHER:PTHR14155:SF464 | PFAM:PF13639 | PFscan:PS50089 |
| SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI000295455F | UniProt:M0SLH6 | MapMan:35.1 |
Description
zinc finger, C3HC4 type domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr4G06090_001]
Coordinates
chr4:+:4648406..4651593
Molecular Weight (calculated)
16844.2 Da
IEP (calculated)
4.558
GRAVY (calculated)
-0.220
Length
147 amino acids
Sequence
(BLAST)
(BLAST)
001: MPDSILLRNV FDRIRRGDNL MLEDVLLFEQ SVFAGGANFH DRFRDMRLDV DNMSYEELLA LGERIGNVNT GLSEEKILNC LRQRKYVSIA SEPSEEAEPC
101: CICREEYIEG EELGRLDCGH DFHTACIKQW LVIKNLCPIC KTTALSI
101: CICREEYIEG EELGRLDCGH DFHTACIKQW LVIKNLCPIC KTTALSI
001: MQGPRSTGDS STGINYADGE PICSTNSETT SNNILNPVDV QFPNNTTGSG RPTYASSSSH VVQNHNWWSF GESSSRLGPS DHLNSNGSKT DRQLLSDGYG
101: FEEGQSGMLL PGESFLRGSS SSHMLSHVNL GKDMDIGSGL QTSGVVIRHN NCETSLGSSS QTAEERSSGP GSSLGGLGSS CKRKALEGAP SHSFPGESHG
201: CFFQTENGAW NEGLAQYDAS SSLSLSMPSQ NSPNVNNQSG LPEPRFGLGG GRAVTASAFP STRSTETISR PGRRLNPGQP PESVAFSFTQ SGSSVRQQQQ
301: LPATSPFVDP LDARAIPVTG SSSSGDGQPS MIHLPALTRN IHQFAWSASS SSRANSMPEE GLSPWDAPRI NSEQPVFTTP ANETRNPVQD QFCWSFTRGN
401: PSTSGDSPFV PRAGSSSGIH GLQPNPTWVT PHNQSRISEV APWSLFPSIE SESATHGASL PLLPTGPSVS SNEAAAPSGS SSRSHRSRQR RSGLLLERQN
501: DHLHLRHLGR SLAADNDGRN RLISEIRQVL SAMRRGENLR FEDYMVFDPL IYQGMAEMHD RHRDMRLDVD NMSYEELLAL GERIGDVSTG LSEEVILKVM
601: KQHKHTSSAA GSHQDMEPCC VCQEEYAEGD DLGTLGCGHE FHTACVKQWL MLKNLCPICK TVALST
101: FEEGQSGMLL PGESFLRGSS SSHMLSHVNL GKDMDIGSGL QTSGVVIRHN NCETSLGSSS QTAEERSSGP GSSLGGLGSS CKRKALEGAP SHSFPGESHG
201: CFFQTENGAW NEGLAQYDAS SSLSLSMPSQ NSPNVNNQSG LPEPRFGLGG GRAVTASAFP STRSTETISR PGRRLNPGQP PESVAFSFTQ SGSSVRQQQQ
301: LPATSPFVDP LDARAIPVTG SSSSGDGQPS MIHLPALTRN IHQFAWSASS SSRANSMPEE GLSPWDAPRI NSEQPVFTTP ANETRNPVQD QFCWSFTRGN
401: PSTSGDSPFV PRAGSSSGIH GLQPNPTWVT PHNQSRISEV APWSLFPSIE SESATHGASL PLLPTGPSVS SNEAAAPSGS SSRSHRSRQR RSGLLLERQN
501: DHLHLRHLGR SLAADNDGRN RLISEIRQVL SAMRRGENLR FEDYMVFDPL IYQGMAEMHD RHRDMRLDVD NMSYEELLAL GERIGDVSTG LSEEVILKVM
601: KQHKHTSSAA GSHQDMEPCC VCQEEYAEGD DLGTLGCGHE FHTACVKQWL MLKNLCPICK TVALST
Arabidopsis Description
MBR2E3 ubiquitin-protein ligase MBR2 [Source:UniProtKB/Swiss-Prot;Acc:O49500]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.