Factsheet for GSMUA_Achr11P23840_001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 4
mitochondrion 1
peroxisome 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	nucleus	12.3	56.25
GSMUA_Achr4P06090_001	Banana	cytosol	14.26	49.66
VIT_16s0022g00290.t01	Wine grape	nucleus	6.84	46.05
GSMUA_Achr4P03550_001	Banana	mitochondrion	3.91	33.33
GSMUA_AchrUn_...	Banana	nucleus	13.28	30.22
VIT_08s0040g02160.t01	Wine grape	nucleus	26.37	24.73
GSMUA_Achr4P13930_001	Banana	nucleus	10.74	22.18
GSMUA_Achr8P31290_001	Banana	nucleus	10.94	22.13
GSMUA_Achr3P13740_001	Banana	nucleus	20.9	21.84
CDY55435	Canola	nucleus	22.46	21.78
KRG95955	Soybean	nucleus	23.24	21.68
Bra023101.1-P	Field mustard	nucleus	22.46	21.58
CDY46757	Canola	nucleus	22.46	21.58
GSMUA_Achr4P11130_001	Banana	nucleus, plastid	14.06	21.56
CDY68424	Canola	nucleus	22.46	21.42
Bra017205.1-P	Field mustard	nucleus	22.27	21.23
CDX79718	Canola	nucleus	21.88	21.09
PGSC0003DMT400004449	Potato	nucleus	22.27	21.03
KRH67668	Soybean	nucleus	22.46	20.87
KRH32434	Soybean	nucleus	21.88	20.78
KRH19845	Soybean	nucleus	22.27	20.73
GSMUA_Achr9P21480_001	Banana	plastid	13.67	20.59
GSMUA_Achr6P03840_001	Banana	nucleus	14.84	20.49
Solyc09g007530.2.1	Tomato	nucleus	21.48	20.3
GSMUA_Achr4P05140_001	Banana	nucleus	11.72	20.27
GSMUA_Achr3P26700_001	Banana	nucleus	11.52	20.21
GSMUA_Achr4P12850_001	Banana	nucleus	17.97	20.18
Os01t0159300-01	Rice	nucleus	19.73	20.16
AT2G37150.3	Thale cress	endoplasmic reticulum, extracellular	23.24	19.87
GSMUA_Achr5P08460_001	Banana	nucleus	22.27	19.86
GSMUA_Achr4P03540_001	Banana	nucleus	7.62	19.8
VIT_13s0019g04100.t01	Wine grape	extracellular	21.68	19.65
GSMUA_Achr1P23200_001	Banana	nucleus	13.48	19.17
TraesCS3B01G120600.2	Wheat	cytosol	19.34	19.11
Os05t0163400-03	Rice	nucleus	19.73	18.95
GSMUA_Achr9P24150_001	Banana	nucleus	11.13	18.94
GSMUA_Achr4P04290_001	Banana	nucleus	8.2	18.92
TraesCS1B01G129600.1	Wheat	nucleus	19.73	18.91
TraesCS3A01G103000.1	Wheat	nucleus	19.14	18.88
TraesCS1A01G107600.1	Wheat	nucleus	19.73	18.81
TraesCS3D01G105300.1	Wheat	cytosol	18.95	18.73
GSMUA_Achr3P29390_001	Banana	golgi, plastid	13.87	18.68
TraesCS1D01G111500.1	Wheat	nucleus	19.53	18.66
GSMUA_Achr10P...	Banana	nucleus	18.36	18.58
EES19093	Sorghum	nucleus	19.34	18.4
EES00281	Sorghum	nucleus	18.36	18.25
HORVU1Hr1G024190.2	Barley	nucleus	19.14	18.25
Zm00001d008649_P003	Maize	cytosol	18.55	18.03
Zm00001d039769_P002	Maize	cytosol	19.34	17.97
GSMUA_Achr9P22530_001	Banana	nucleus	21.29	16.93
GSMUA_Achr1P23500_001	Banana	nucleus	16.6	16.54
GSMUA_Achr4P04180_001	Banana	mitochondrion, nucleus, peroxisome, plastid	9.77	16.29
GSMUA_Achr4P30500_001	Banana	nucleus	10.74	16.22
GSMUA_Achr9P11290_001	Banana	nucleus	21.68	15.93
HORVU3Hr1G018800.2	Barley	cytosol, plastid	18.16	15.79
GSMUA_Achr8P15680_001	Banana	nucleus	21.68	15.42
GSMUA_Achr3P05160_001	Banana	nucleus	16.41	14.26
GSMUA_Achr7P15850_001	Banana	nucleus	17.77	14.0
Bra028576.1-P	Field mustard	cytosol	7.42	13.43
GSMUA_Achr4P06080_001	Banana	nucleus	9.77	10.8
CDY47948	Canola	nucleus	9.77	9.94
Bra036336.1-P	Field mustard	nucleus	9.77	9.94

Protein Annotations

EnsemblPlants:GSMUA_Achr11P23840_001	EnsemblPlants:GSMUA_Achr11T23840_001	EnsemblPlantsGene:GSMUA_Achr11G23840_001	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR22937	PANTHER:PTHR22937:SF47	PFAM:PF13639	PFscan:PS50089
SEG:seg	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI000296449E	UniProt:M0RUW4	MapMan:35.1

Description

Putative zinc finger, C3HC4 type domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr11G23840_001]

Coordinates

chr11:-:23602080..23610255

Molecular Weight (calculated)

56819.5 Da

IEP (calculated)

6.832

GRAVY (calculated)

-0.572

Length

512 amino acids

Sequence
(BLAST)

001: MEHRHLVGQP QMSVRDQEQI WNHPHPDPRS NLGPGTFISP ENIAVCGPNS VAFANPASAT NYPVMPNFNI EAPCYVRANS RMAQESYTPY PSVRSSSQFP
101: PYYVLHEPCF NQVTVGDING TINPPTDYDG ATYKRKMPTI QTFPDSGSTN GHRSDASSSN HPVSTGLLES THTLGPHCFL RDPVNMASSY RSNNLLSSEE
201: DHWNVRSRPA SVLHPGNISL TNHSSSNFSD HFHPLANTSG VNLPGHRNLA PVPLDPHIRL MSSGIGSFNH EMNQLPGRHA TNIAVDIDGR RNFFLIPGWP
301: SPDLMVDRSS YSQRTSYRAN SSYRSVGSEA NLVDFRLPAV GRVVPPRYPG HPSLQGHMNE RNGSIRIRDD GDEGIGHSRW ASETLAVMDR STLYDSRNLF
401: DEHHDMRLDI DNMSYEDLLA LEERIGNVNT GLSDVAISRC LMEAIYCSDQ TPGDHEKGRC TICLETYKGK DCLGRLSCGH DFHACCIKKW LLIKNACPIC
501: KASAQKGCLL EQ

Best Arabidopsis Sequence Match ( AT2G37150.10 )
(BLAST)

001: MGHRHFLGSS QFFDDEHDQG WNHTHPEHPY SSQATSGTSE NRSHVYPAEN MLNEGMPVSS HWNSSPGPNA YTDSGHSVER PHYNPGVSGP SHDPSVNSTV
101: PTFSAPHENY VTFASSSSYN SQTWSNASYV DHQSMESVRG AQKRKRPCPS SIYEMGSSSQ YHGDRTPADT HFPSELHLGK SITHDHDPHY MPWLMNPTYR
201: SNNLSIRGES SSRNVRSRPT LDSETSLGRN NLPRSLSLDS HSTHHHSVDH YGSGQFPGQT SHGNKDWNCA RLSPVLRDIN GFSPETNNFL PARSVVNSLS
301: VNTSGYHHHE LTGNRNPTVS HGVPGTSTLS TSSSRFSHRS TSTYRSSSHG SRSGHVASSS GDRSHLVTET YPSRHLRPPP HISWRSGDRP GRRRSSYERF
401: QPPFDEVALH ERFSSEEFMV EDRQPQYYGS RNMLDHHRDM RLDIDNMSYE ELLDLGERIG SVNTGLSDSA ISSCLLATMY YPSYQTEEQR KCAICLEEYK
501: EKEELGEVKG CGHDYHGRCI KKWLSMKNSC PICKSPALPD ASKNSS

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IQ07]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.