CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os05t0163400-03	Rice	nucleus	64.87	65.48
HORVU1Hr1G024190.2	Barley	nucleus	64.13	64.25
TraesCS1B01G129600.1	Wheat	nucleus	63.57	64.04
TraesCS1A01G107600.1	Wheat	nucleus	63.75	63.87
TraesCS1D01G111500.1	Wheat	nucleus	63.57	63.81
GSMUA_AchrUn_...	Banana	nucleus	9.48	45.54
EES00281	Sorghum	nucleus	40.52	42.33
VIT_16s0022g00290.t01	Wine grape	nucleus	5.95	42.11
OQU80744	Sorghum	mitochondrion	7.62	28.47
EER99218	Sorghum	nucleus	8.36	25.71
EES12797	Sorghum	nucleus	15.8	22.73
VIT_08s0040g02160.t01	Wine grape	nucleus	21.19	20.88
KRH32434	Soybean	nucleus	20.63	20.59
EES11283	Sorghum	nucleus	9.29	20.24
KRG95955	Soybean	nucleus	20.63	20.22
KRH19845	Soybean	nucleus	20.63	20.18
KRH67668	Soybean	nucleus	20.45	19.96
Solyc09g007530.2.1	Tomato	nucleus	19.89	19.74
PGSC0003DMT400004449	Potato	nucleus	19.7	19.56
OQU80147	Sorghum	nucleus	13.01	19.55
Bra023101.1-P	Field mustard	nucleus	19.33	19.51
OQU87370	Sorghum	nucleus	12.64	19.48
CDX79718	Canola	nucleus	19.14	19.4
GSMUA_Achr11P...	Banana	cytosol, nucleus, peroxisome	18.4	19.34
CDY46757	Canola	nucleus	19.14	19.32
CDY55435	Canola	nucleus	18.59	18.94
CDY68424	Canola	nucleus	18.77	18.81
Bra017205.1-P	Field mustard	nucleus	18.59	18.62
VIT_13s0019g04100.t01	Wine grape	extracellular	19.52	18.58
KXG40075	Sorghum	cytosol	8.55	18.47
EES18624	Sorghum	cytosol, mitochondrion, nucleus, plastid	12.45	17.82
EES03404	Sorghum	nucleus	17.1	17.66
GSMUA_Achr5P08460_001	Banana	nucleus	18.77	17.6
KXG22536	Sorghum	nucleus	16.36	17.32
EES15239	Sorghum	nucleus	10.04	17.2
KXG19166	Sorghum	nucleus	8.55	16.91
AT2G37150.3	Thale cress	endoplasmic reticulum, extracellular	18.22	16.36
EER97094	Sorghum	nucleus	9.85	16.36
EES04530	Sorghum	nucleus	15.43	16.02
EES11547	Sorghum	nucleus	19.14	15.61
EES10483	Sorghum	nucleus	18.4	14.22
Bra028576.1-P	Field mustard	cytosol	7.25	13.78
KXG20741	Sorghum	nucleus	14.68	13.39
CDY47948	Canola	nucleus	7.99	8.55
Bra036336.1-P	Field mustard	nucleus	7.81	8.35

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	EntrezGene:8071210	UniProt:C5Z0Q2	EnsemblPlants:EES19093	ProteinID:EES19093
ProteinID:EES19093.1	InterPro:IPR001841	InterPro:IPR013083	PFAM:PF13639	PFscan:PS50089	PANTHER:PTHR22937
PANTHER:PTHR22937:SF45	SMART:SM00184	EnsemblPlantsGene:SORBI_3009G056500	SUPFAM:SSF57850	unigene:Sbi.5252	UniParc:UPI0001A88D66
RefSeq:XP_002440663.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr9:-:5734180..5741520

Molecular Weight (calculated)

58248.5 Da

IEP (calculated)

7.444

GRAVY (calculated)

-0.680

Length

538 amino acids

Sequence
(BLAST)

001: MAGHHHNNTH ASRMDHVNRF QSEPQPFGPK LFMHSRTDAA NGALSSGYGG APIRPNDIPS SSHTGQSHIQ HSDAPGTMLA SYSGYPHAGS SSSIYAPHNT
101: HHPPPLSYPH RSEDNFIPSS HMDDRRVALK RRNPIIHPVD GVNIGSSYAG SSSNPQFSRY MPPNHIPAPE PCPSRITSNM GSRYWSDHPF GGHGGSQRNV
201: RGRHDHNPIH LGHNPGVPCA SSSTHGPPHQ TNVIGHPRST AVPQDRAHFS IPPRVAAPGT DGNSSMVFRE RPYYSAPQRT NINAPPVPTP PGSSDSLHFV
301: HGGYAPRAAP PNTISTYPAP AFATSNNTVT VTHEPDIPSY RPAVPSYPPA TSAAASSIHA EAATSPRHLG HVALGSGGSA RSRRLRDSYH AFRPLIIEEN
401: NLRGPAAERF MMLDELVIHE SREDSDPHWD MRLDIDDMSY EELLALGERI GNVNTGLADE KLSSCVMEIT CCSSARTHGD TESARCVICL EDYKFKDSIG
501: KLKCGHDYHA DCIKKWLQVK NACPVCKASA ADDSGGTE

Best Arabidopsis Sequence Match ( AT2G15530.5 )
(BLAST)

001: MNPMQGPRSI GGSSTEVNQV DGESIYCTET SLNTMLNPAD TGFPNNSTPS GRPTYASSSS HAAQDHTWWR FGESSSIPGP SDQVNSIGIK TSHQLPQDGT
101: HHFVGYGSEG RQTGLNGMMV DGGVHAGSHI RNVPSFLRGS SSNPMPQHVD MSMDMDSDNC NAQTSGVVIR HNSYGSSLGS SVQAAGESSS GPASPFGGWG
201: SSCKRKALEG SPSHYFSGET PNRIVQTENS ASHASLSQYG ASSSLSLATP SQSSPNVTNH FGRTEQMFGS GGGRAVAASA FHSTRNTDTL SRAGRRLNPR
301: QPQESVAFSV SHGGTSVRPT GSLQQNLPLN SPFVDPPDVR SSSITSGSNT GENQTNIVHL PALTRNIHQY AWDASFSSRA SNPSGIGMPA ERLGPQWETP
401: RSNQEQPLFA PATDMRQPVH DLWNFARGSP GSSVDSLFVP RAGPSSAIHT PQPNPTWIPP QNAPPHNPSR TSELSPWSLF PSIESPSASH GGPLPLLPAG
501: PSVSSNEVTM PSSSNSRSHR SRHRRSGLLL ERQNELLHLR HIGRSLAADG NGRNQIISEI RQVLHAMRRG ENLRVEDYMV FDPLIYQGMT DMHDRHREMR
601: LDVDNMSYEE LLALGERIGD VSTGLSEEVI LKAMKQHKHT SSSPSSVELH QNIEPCCICQ EEYVEGDNLG TLKCGHEFHK DCIKQWVMIK NLCPICKTEA
701: LKTP

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IIG9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.