Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- golgi 1
- plasma membrane 1
- endoplasmic reticulum 1
- vacuole 1
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_07s0031g00380.t01 | Wine grape | cytosol | 43.42 | 47.14 |
| VIT_07s0031g00400.t01 | Wine grape | cytoskeleton, cytosol, nucleus | 39.47 | 29.41 |
| GSMUA_AchrUn_... | Banana | nucleus | 40.79 | 27.68 |
| VIT_11s0118g00640.t01 | Wine grape | nucleus | 35.53 | 22.69 |
| VIT_07s0031g00370.t01 | Wine grape | mitochondrion | 42.11 | 22.07 |
| VIT_07s0031g00390.t01 | Wine grape | nucleus | 44.74 | 13.93 |
| VIT_07s0031g00440.t01 | Wine grape | nucleus | 38.16 | 13.18 |
| VIT_13s0019g04100.t01 | Wine grape | extracellular | 93.42 | 12.57 |
| VIT_18s0001g02280.t01 | Wine grape | nucleus | 30.26 | 11.11 |
| VIT_12s0028g01220.t01 | Wine grape | nucleus | 30.26 | 10.5 |
| VIT_06s0004g01930.t01 | Wine grape | nucleus | 30.26 | 9.13 |
| VIT_01s0011g04080.t01 | Wine grape | nucleus | 42.11 | 9.12 |
| VIT_08s0040g02160.t01 | Wine grape | nucleus | 63.16 | 8.79 |
| VIT_13s0064g01030.t01 | Wine grape | nucleus | 27.63 | 8.5 |
| VIT_17s0000g03210.t01 | Wine grape | nucleus | 40.79 | 8.36 |
| CDX79718 | Canola | nucleus | 56.58 | 8.1 |
| VIT_03s0088g00930.t01 | Wine grape | nucleus, plastid | 40.79 | 7.89 |
| CDY46757 | Canola | nucleus | 55.26 | 7.88 |
| Bra023101.1-P | Field mustard | nucleus | 55.26 | 7.88 |
| CDY55435 | Canola | nucleus | 53.95 | 7.77 |
| VIT_03s0097g00680.t01 | Wine grape | nucleus | 42.11 | 7.6 |
| AT2G37150.3 | Thale cress | endoplasmic reticulum, extracellular | 59.21 | 7.51 |
| VIT_10s0042g00580.t01 | Wine grape | nucleus | 30.26 | 7.47 |
| Bra017205.1-P | Field mustard | nucleus | 52.63 | 7.45 |
| CDY68424 | Canola | nucleus | 52.63 | 7.45 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, peroxisome | 46.05 | 6.84 |
| VIT_03s0088g01090.t01 | Wine grape | nucleus | 40.79 | 6.78 |
| VIT_19s0014g01850.t01 | Wine grape | nucleus | 44.74 | 6.32 |
| GSMUA_Achr5P08460_001 | Banana | nucleus | 46.05 | 6.1 |
| EES19093 | Sorghum | nucleus | 42.11 | 5.95 |
| EES00281 | Sorghum | nucleus | 39.47 | 5.83 |
| TraesCS1B01G129600.1 | Wheat | nucleus | 40.79 | 5.81 |
| Os01t0159300-01 | Rice | nucleus | 38.16 | 5.79 |
| TraesCS1D01G111500.1 | Wheat | nucleus | 40.79 | 5.78 |
| TraesCS1A01G107600.1 | Wheat | nucleus | 40.79 | 5.77 |
| HORVU1Hr1G024190.2 | Barley | nucleus | 40.79 | 5.77 |
| Zm00001d008649_P003 | Maize | cytosol | 39.47 | 5.69 |
| VIT_04s0008g02390.t01 | Wine grape | nucleus | 40.79 | 5.64 |
| Os05t0163400-03 | Rice | nucleus | 39.47 | 5.63 |
| Zm00001d039769_P002 | Maize | cytosol | 40.79 | 5.63 |
| TraesCS3D01G105300.1 | Wheat | cytosol | 34.21 | 5.02 |
| TraesCS3B01G120600.2 | Wheat | cytosol | 32.89 | 4.83 |
| TraesCS3A01G103000.1 | Wheat | nucleus | 32.89 | 4.82 |
| VIT_18s0001g10260.t01 | Wine grape | nucleus | 39.47 | 4.09 |
| HORVU3Hr1G018800.2 | Barley | cytosol, plastid | 31.58 | 4.07 |
| VIT_03s0063g00160.t01 | Wine grape | nucleus | 36.84 | 3.81 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.2 | ProteinID:CCB49345 | ProteinID:CCB49345.1 | UniProt:F6HAI1 | EMBL:FN595506 |
| InterPro:IPR001841 | InterPro:IPR013083 | PFAM:PF13639 | PFscan:PS50089 | PANTHER:PTHR22937 | PANTHER:PTHR22937:SF74 |
| SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI000210904F | ArrayExpress:VIT_16s0022g00290 | EnsemblPlantsGene:VIT_16s0022g00290 | EnsemblPlants:VIT_16s0022g00290.t01 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | : | : | : | : |
Description
No Description!
Coordinates
chr16:+:11163433..11164324
Molecular Weight (calculated)
8644.5 Da
IEP (calculated)
7.735
GRAVY (calculated)
-0.651
Length
76 amino acids
Sequence
(BLAST)
(BLAST)
1: MVSKCLTKTT YHSSDQNQEE AMCTICLEEY KSKEEVGRMK NCGHEYHVGC IRKWLSMKNS CPICKAPALA NGLKEE
001: MLVPHVSPLG LVAGLSLMYS DLRIVLWTFL VDWESKANLN SSHLEVILIH RGLMGHRHFL GSSQFFDDEH DQGWNHTHPE HPYSSQATSG TSENRSHVYP
101: AENMLNEGMP VSSHWNSSPG PNAYTDSGHS VERPHYNPGV SGPSHDPSVN STVPTFSAPH ENYVTFASSS SYNSQTWSNA SYVDHQSMES VRGAQKRKRP
201: CPSSIYEMGS SSQYHGDRTP ADTHFPSELH LGKSITHDHD PHYMPWLMNP TYRSNNLSIR GESSSRNVRS RPTLDSETSL GRNNLPRSLS LDSHSTHHHS
301: VDHYGSGQFP GQTSHGNKDW NCARLSPVLR DINGFSPETN NFLPARSVVN SLSVNTSGYH HHELTGNRNP TVSHGVPGTS TLSTSSSRFS HRSTSTYRSS
401: SHGSRSGHVA SSSGDRSHLV TETYPSRHLR PPPHISWRSG DRPGRRRSSY ERFQPPFDEV ALHERFSSEE FMVEDRQPQY YGSRNMLDHH RDMRLDIDNM
501: SYEELLDLGE RIGSVNTGLS DSAISSCLLA TMYYPSYQTE EQRKCAICLE EYKEKEELGE VKGCGHDYHG RCIKKWLSMK NSCPICKSPA LPDASKNSS
101: AENMLNEGMP VSSHWNSSPG PNAYTDSGHS VERPHYNPGV SGPSHDPSVN STVPTFSAPH ENYVTFASSS SYNSQTWSNA SYVDHQSMES VRGAQKRKRP
201: CPSSIYEMGS SSQYHGDRTP ADTHFPSELH LGKSITHDHD PHYMPWLMNP TYRSNNLSIR GESSSRNVRS RPTLDSETSL GRNNLPRSLS LDSHSTHHHS
301: VDHYGSGQFP GQTSHGNKDW NCARLSPVLR DINGFSPETN NFLPARSVVN SLSVNTSGYH HHELTGNRNP TVSHGVPGTS TLSTSSSRFS HRSTSTYRSS
401: SHGSRSGHVA SSSGDRSHLV TETYPSRHLR PPPHISWRSG DRPGRRRSSY ERFQPPFDEV ALHERFSSEE FMVEDRQPQY YGSRNMLDHH RDMRLDIDNM
501: SYEELLDLGE RIGSVNTGLS DSAISSCLLA TMYYPSYQTE EQRKCAICLE EYKEKEELGE VKGCGHDYHG RCIKKWLSMK NSCPICKSPA LPDASKNSS
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IQ07]
SUBAcon: [extracellular,endoplasmic reticulum]
SUBAcon: [extracellular,endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.