Factsheet for VIT_18s0001g10260.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_19s0014g03290.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G42940.1	VIT_19s0014g03290.t01	AT1G52890.1	12646039

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH05664	Soybean	nucleus	12.13	73.55
VIT_07s0031g00400.t01	Wine grape	cytoskeleton, cytosol, nucleus	8.17	58.82
KRH52013	Soybean	nucleus	55.99	58.05
KRH61306	Soybean	nucleus	51.36	57.65
KRH61311	Soybean	nucleus	55.04	55.04
Solyc04g078680.2.1	Tomato	nucleus	52.86	53.74
VIT_11s0118g00640.t01	Wine grape	nucleus	8.45	52.1
VIT_07s0031g00370.t01	Wine grape	mitochondrion	10.22	51.72
PGSC0003DMT400020528	Potato	nucleus	48.37	51.52
VIT_03s0063g00160.t01	Wine grape	nucleus	50.95	50.95
Solyc12g088740.1.1	Tomato	nucleus	48.09	50.94
PGSC0003DMT400039849	Potato	nucleus	47.96	50.79
VIT_07s0031g00380.t01	Wine grape	cytosol	4.77	50.0
CDY43590	Canola	nucleus	26.02	45.37
CDY32973	Canola	nucleus	25.2	45.12
Bra027467.1-P	Field mustard	nucleus	25.07	44.88
VIT_07s0031g00440.t01	Wine grape	nucleus	13.08	43.64
CDY17114	Canola	nucleus	30.65	42.37
AT5G42940.1	Thale cress	nucleus	39.65	42.11
CDY17061	Canola	nucleus	34.6	41.91
CDY43220	Canola	nucleus	34.6	41.71
CDX71531	Canola	nucleus	35.97	41.44
CDY22376	Canola	nucleus	34.6	41.3
Bra033652.1-P	Field mustard	nucleus	34.6	41.3
AT1G45180.3	Thale cress	nucleus	36.1	41.09
Bra014043.1-P	Field mustard	nucleus	31.34	39.93
VIT_16s0022g00290.t01	Wine grape	nucleus	4.09	39.47
VIT_07s0031g00390.t01	Wine grape	nucleus	11.44	34.43
VIT_18s0001g02280.t01	Wine grape	nucleus	7.9	28.02
VIT_19s0014g01850.t01	Wine grape	nucleus	19.75	26.95
VIT_17s0000g03210.t01	Wine grape	nucleus	13.35	26.42
VIT_06s0004g01930.t01	Wine grape	nucleus	8.99	26.19
VIT_03s0088g00930.t01	Wine grape	nucleus, plastid	13.9	25.95
VIT_08s0040g02160.t01	Wine grape	nucleus	18.66	25.09
VIT_04s0008g02390.t01	Wine grape	nucleus	18.26	24.36
VIT_13s0064g01030.t01	Wine grape	nucleus	8.04	23.89
VIT_03s0088g01090.t01	Wine grape	nucleus	14.85	23.85
VIT_01s0011g04080.t01	Wine grape	nucleus	11.17	23.36
VIT_03s0097g00680.t01	Wine grape	nucleus	13.08	22.8
VIT_10s0042g00580.t01	Wine grape	nucleus	9.4	22.4
VIT_12s0028g01220.t01	Wine grape	nucleus	6.54	21.92
VIT_13s0019g04100.t01	Wine grape	extracellular	15.4	20.0

Protein Annotations

EntrezGene:100267740	wikigene:100267740	Gene3D:3.30.40.10	MapMan:35.1	EMBL:AM462788	ProteinID:CAN83345
ProteinID:CAN83345.1	ProteinID:CCB45827	ProteinID:CCB45827.1	UniProt:F6H1B8	EMBL:FN595227	GO:GO:0003674
GO:GO:0003824	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0043161	GO:GO:0061630	InterPro:IPR001841
InterPro:IPR013083	EntrezGene:LOC100267740	wikigene:LOC100267740	PFAM:PF13639	PFscan:PS50089	PANTHER:PTHR14155
PANTHER:PTHR14155:SF464	SMART:SM00184	SUPFAM:SSF57850	TIGR:TC63032	UniParc:UPI00019854A9	ArrayExpress:VIT_18s0001g10260
EnsemblPlantsGene:VIT_18s0001g10260	EnsemblPlants:VIT_18s0001g10260.t01	unigene:Vvi.11399	RefSeq:XP_002282892	RefSeq:XP_002282892.1	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr18:+:8598100..8604904

Molecular Weight (calculated)

78558.8 Da

IEP (calculated)

6.400

GRAVY (calculated)

-0.572

Length

734 amino acids

Sequence
(BLAST)

001: MQGQKGAIGS LPETLNFDHG STSSGAGLDQ QLCWNNMRNP AENRLADYMQ PPSDTNLAFL NSISHGGQNL SGWSLGEPSS INTQNIVSCD ECKTEHGWAT
101: SVSGCAGAGP RLEEHRCEPS NVLSLDNVNV NPSSNQIVNG PLFLQSSSSD AIAQNLNLNA GFVGSGGDDR QGLECPNLYK SSGSENLPSA SSSSDPFGPR
201: ILSGGYLVEE NDGRAGSSLE GRRLSCKRKA LEGNIGQSSV GGSSSSFQRT ENNVWHAVVP ARYNAGNGLS ISSPSGNIIG ASPAEQVNPR LGLGVRGVAT
301: DSLPVLNVPG SAESSHRNFR MRINPSHQQD SVPHNLFSAG GSVRHSNVSS HQQSTRLIPV NHAPDLRSTP AADNASSQSQ SVVNHAPNLP RTMQSFRWSG
401: ASSSRHGNSS SPLISGERDA APREESSSRS MPRNTLEHSM FLPAIDLRSL PQNPTNRNLA GGNMTTPGNS ASTSRTGSSS GVNSSSAPTW GPPRDPPSQY
501: SRRLSEYVRR SLFSSVGADS GGQSSNYSPL HSGPSPSSQE VAPSSGAGNQ GHHQSYPRSA LLMERHGDGV LGIPYSLRTL AAASEGRSRL VSEIRNVLDL
601: MRRGEDLRFE DVMILDQSVF FGVADIHDRH RDMRLDVDNM SYEELLALEE RIGDVCTGLS EETILKQLKQ RKYWSVARGA EVEVEPCCIC QEEYGDGEDI
701: GTLECGHDFH YGCIKQWLMH KNLCPICKTT ALGI

Best Arabidopsis Sequence Match ( AT5G42940.1 )
(BLAST)

001: MQGERASLGY LSEALNFEHG SSSSNGVIDH WENIHSLGDN DLQDYMIANS ESNTSLANSV YHEQQGLRRF SLGEASSSGT KDEASSHNEQ RMETRCFDGR
101: GNEIIDLDPV FAQPSGTNQP VQNVNLNAEY IEIHEDINPY RGRSGFIEAN GPGTRVSQPG RSFEENGVGT GSSVEGRRAS CKRKALEGSI SQSSSGGYHD
201: FQRGESSSWT PGSTVFRPGN GLNISGSLDN GPRGMVSGTV PNFPVSAPNF PVSAIAESSS RNICVRSNPS DHQETVNPST FAAGTVVRRP VPPSQLNLSR
301: HLPADQHSLD LRPGQSFVVS RNPNSTPVSI PPGSRTMLPP FRWTGSSLVG GTSNSTAPVE RNLHLDETRS RSIPGNTLEI PMFAAPEVGN FARSQSSRNV
401: TNGNLNSASS VSRTGSTTSV PPPPPPSSNL AWTSYQNSPH YQRRRTERSE LARRSLLSSL AADATNQRSG DHPTLRSLAP PASSDGLVLQ PGGDNSQMHN
501: RAYSRAGPLF DRQGDSVVGI PHPLRALAAA SRGRSRLMVS QMQNVLDVMR RDANNNNLRL EDVMLLNHSV LFDGATGHDR YRDMRLDVDN MSYEELLALE
601: ERIGDVCTGV NEETISNRLK QRKYKSNTKS PQDAEPCCVC QEEYTEGEDM GTLECGHEFH SQCIKEWLKQ KNLCPICKTT GLNTAKKRRI A

Arabidopsis Description

RHG1AProbable E3 ubiquitin-protein ligase RHG1A [Source:UniProtKB/Swiss-Prot;Acc:Q9FMM4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.