Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G42940.1 | CDY26031 | AT1G52890.1 | 12646039 |
| AT5G42940.1 | CDY26032 | AT1G52890.1 | 12646039 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY22376 | Canola | nucleus | 85.09 | 88.13 |
| CDY43590 | Canola | nucleus | 51.81 | 78.38 |
| CDY32973 | Canola | nucleus | 49.92 | 77.56 |
| AT5G42940.1 | Thale cress | nucleus | 76.92 | 70.91 |
| KRH05664 | Soybean | nucleus | 12.4 | 65.29 |
| CDY17114 | Canola | nucleus | 44.9 | 53.86 |
| CDY17061 | Canola | nucleus | 50.24 | 52.81 |
| CDY43220 | Canola | nucleus | 50.39 | 52.71 |
| CDY47948 | Canola | nucleus | 34.69 | 43.94 |
| VIT_18s0001g10260.t01 | Wine grape | nucleus | 41.44 | 35.97 |
| KRH61306 | Soybean | nucleus | 34.38 | 33.49 |
| KRH52013 | Soybean | nucleus | 37.21 | 33.47 |
| Solyc04g078680.2.1 | Tomato | nucleus | 37.68 | 33.24 |
| Solyc12g088740.1.1 | Tomato | nucleus | 35.32 | 32.47 |
| KRH61311 | Soybean | nucleus | 36.42 | 31.61 |
| PGSC0003DMT400039849 | Potato | nucleus | 34.38 | 31.6 |
| PGSC0003DMT400020528 | Potato | nucleus | 33.12 | 30.62 |
| CDY37230 | Canola | nucleus | 27.79 | 30.05 |
| CDY62314 | Canola | nucleus | 27.79 | 29.9 |
| CDY13429 | Canola | cytosol | 10.36 | 25.58 |
| CDX77848 | Canola | nucleus | 7.85 | 23.58 |
| CDY67192 | Canola | nucleus | 7.69 | 23.0 |
| CDX97032 | Canola | plastid | 11.93 | 22.69 |
| CDX68213 | Canola | nucleus, plastid | 12.4 | 22.64 |
| CDY71882 | Canola | plastid | 12.24 | 22.29 |
| CDX93901 | Canola | nucleus | 8.16 | 21.67 |
| CDY11092 | Canola | cytosol, plastid | 11.77 | 21.55 |
| CDY53710 | Canola | nucleus | 8.16 | 21.49 |
| CDY40109 | Canola | nucleus | 6.12 | 20.97 |
| CDX83878 | Canola | nucleus | 11.62 | 20.73 |
| CDY60141 | Canola | plastid | 11.46 | 20.45 |
| CDY69560 | Canola | nucleus | 16.33 | 20.43 |
| CDX96741 | Canola | nucleus | 11.62 | 20.33 |
| CDX85750 | Canola | nucleus | 12.24 | 20.21 |
| CDY26006 | Canola | nucleus | 14.6 | 20.13 |
| CDY25871 | Canola | nucleus | 15.07 | 20.08 |
| CDY55839 | Canola | nucleus | 15.38 | 20.04 |
| CDX73013 | Canola | plastid | 11.15 | 20.0 |
| CDY46757 | Canola | nucleus | 16.64 | 19.89 |
| CDX88140 | Canola | nucleus | 14.91 | 19.71 |
| CDY24110 | Canola | nucleus | 14.13 | 19.57 |
| CDX79718 | Canola | nucleus | 16.17 | 19.4 |
| CDY68658 | Canola | nucleus | 14.13 | 19.19 |
| CDY68424 | Canola | nucleus | 15.23 | 18.06 |
| CDX75805 | Canola | cytosol | 12.56 | 18.06 |
| CDY55435 | Canola | nucleus | 14.91 | 17.99 |
| CDY63645 | Canola | nucleus | 12.87 | 17.75 |
| CDX91624 | Canola | nucleus | 6.12 | 17.73 |
| CDX82450 | Canola | nucleus | 12.4 | 17.63 |
| CDX78393 | Canola | nucleus | 13.66 | 17.61 |
| CDY13433 | Canola | nucleus | 12.87 | 17.6 |
| CDY27083 | Canola | nucleus | 5.97 | 17.35 |
| CDX70363 | Canola | nucleus | 13.19 | 17.28 |
| CDX95473 | Canola | nucleus | 12.56 | 17.24 |
| CDX97629 | Canola | nucleus | 11.93 | 17.23 |
| CDY31919 | Canola | nucleus | 7.38 | 17.22 |
| CDY24595 | Canola | nucleus | 8.48 | 17.14 |
| CDX91625 | Canola | cytosol | 6.12 | 17.03 |
| CDY33429 | Canola | nucleus | 8.79 | 16.97 |
| CDY25357 | Canola | nucleus | 8.48 | 16.88 |
| CDX97044 | Canola | nucleus | 13.5 | 16.86 |
| CDY00512 | Canola | nucleus | 7.22 | 16.85 |
| CDY36635 | Canola | nucleus | 15.7 | 16.78 |
| CDY68521 | Canola | nucleus | 11.46 | 16.55 |
| CDY42218 | Canola | nucleus | 8.63 | 16.47 |
| CDX69813 | Canola | mitochondrion | 13.5 | 16.14 |
| CDY27082 | Canola | cytosol | 5.65 | 15.13 |
Protein Annotations
| EnsemblPlants:CDX71531 | EnsemblPlantsGene:GSBRNA2T00148489001 | Gene3D:3.30.40.10 | GO:A0A078C3J7 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR14155 | PANTHER:PTHR14155:SF464 | PFAM:PF13639 | PFscan:PS50089 |
| ProteinID:CDX71531 | ProteinID:CDX71531.1 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI0004EF3F7C |
| MapMan:35.1 | : | : | : | : | : |
Description
BnaC04g17660D
Coordinates
chrLK031793:-:2414427..2417975
Molecular Weight (calculated)
69267.9 Da
IEP (calculated)
5.998
GRAVY (calculated)
-0.744
Length
637 amino acids
Sequence
(BLAST)
(BLAST)
001: MQGERASLGY LSESLNFEHG SSSSNGVIDH WENIHGLGDN DLQDYMIANS EYPEQHRFSL GEVASSSGTK NEASSHNEQR RNEIIDLDSD SEQPSGDIQP
101: VPNVNLNAEY IELDEDDNLV SEANGSGTRV SQPGRPFEET SVRIGSSVDG RRASCKRKAI EGSSSGQSSF GGYGDFHQGE SSSSWTPAST EYRPGNGLNI
201: SGPRGQVSAT ASNFLGNPSE QQETVNPAAF SAGTVVRRPV PPSHSQSSLS RLVPSDQQHL LELRHGQSSG NVFSRNPNPP AMSVPPVSRN MIPPFQWTES
301: SLAGESSNST TERNNLHLDE TRSRSIAAVS VLENPLLNPA PDLRSASGSQ SSRNANLSIA SSVSGTGSST GVQAASSNLG WTPYQNLPHH QRRRSELARR
401: SLISSLSADA RSGEHHHPPL RSLAPPAPPD GLVLQPGGGD SSQMHNRAYS RAGLWLDRQV DSLVGAPQSL RALAATSRGR NRLMVSQMQN ILDVMRRDPN
501: HNLRLEDVML LNQSGIFDGA AGMHDRYRDM RLDVDNMSYE ELLALEERIG DVCTGVNEET ISNRLKKSKY KSSTKSPQDA EPCCICQEEY SEGEDMGTLE
601: CGHEFHSQCI KEWLKQKNLC PICKTTGLNT AKKRKLG
101: VPNVNLNAEY IELDEDDNLV SEANGSGTRV SQPGRPFEET SVRIGSSVDG RRASCKRKAI EGSSSGQSSF GGYGDFHQGE SSSSWTPAST EYRPGNGLNI
201: SGPRGQVSAT ASNFLGNPSE QQETVNPAAF SAGTVVRRPV PPSHSQSSLS RLVPSDQQHL LELRHGQSSG NVFSRNPNPP AMSVPPVSRN MIPPFQWTES
301: SLAGESSNST TERNNLHLDE TRSRSIAAVS VLENPLLNPA PDLRSASGSQ SSRNANLSIA SSVSGTGSST GVQAASSNLG WTPYQNLPHH QRRRSELARR
401: SLISSLSADA RSGEHHHPPL RSLAPPAPPD GLVLQPGGGD SSQMHNRAYS RAGLWLDRQV DSLVGAPQSL RALAATSRGR NRLMVSQMQN ILDVMRRDPN
501: HNLRLEDVML LNQSGIFDGA AGMHDRYRDM RLDVDNMSYE ELLALEERIG DVCTGVNEET ISNRLKKSKY KSSTKSPQDA EPCCICQEEY SEGEDMGTLE
601: CGHEFHSQCI KEWLKQKNLC PICKTTGLNT AKKRKLG
001: MQGERASLGY LSEALNFEHG SSSSNGVIDH WENIHSLGDN DLQDYMIANS ESNTSLANSV YHEQQGLRRF SLGEASSSGT KDEASSHNEQ RMETRCFDGR
101: GNEIIDLDPV FAQPSGTNQP VQNVNLNAEY IEIHEDINPY RGRSGFIEAN GPGTRVSQPG RSFEENGVGT GSSVEGRRAS CKRKALEGSI SQSSSGGYHD
201: FQRGESSSWT PGSTVFRPGN GLNISGSLDN GPRGMVSGTV PNFPVSAPNF PVSAIAESSS RNICVRSNPS DHQETVNPST FAAGTVVRRP VPPSQLNLSR
301: HLPADQHSLD LRPGQSFVVS RNPNSTPVSI PPGSRTMLPP FRWTGSSLVG GTSNSTAPVE RNLHLDETRS RSIPGNTLEI PMFAAPEVGN FARSQSSRNV
401: TNGNLNSASS VSRTGSTTSV PPPPPPSSNL AWTSYQNSPH YQRRRTERSE LARRSLLSSL AADATNQRSG DHPTLRSLAP PASSDGLVLQ PGGDNSQMHN
501: RAYSRAGPLF DRQGDSVVGI PHPLRALAAA SRGRSRLMVS QMQNVLDVMR RDANNNNLRL EDVMLLNHSV LFDGATGHDR YRDMRLDVDN MSYEELLALE
601: ERIGDVCTGV NEETISNRLK QRKYKSNTKS PQDAEPCCVC QEEYTEGEDM GTLECGHEFH SQCIKEWLKQ KNLCPICKTT GLNTAKKRRI A
101: GNEIIDLDPV FAQPSGTNQP VQNVNLNAEY IEIHEDINPY RGRSGFIEAN GPGTRVSQPG RSFEENGVGT GSSVEGRRAS CKRKALEGSI SQSSSGGYHD
201: FQRGESSSWT PGSTVFRPGN GLNISGSLDN GPRGMVSGTV PNFPVSAPNF PVSAIAESSS RNICVRSNPS DHQETVNPST FAAGTVVRRP VPPSQLNLSR
301: HLPADQHSLD LRPGQSFVVS RNPNSTPVSI PPGSRTMLPP FRWTGSSLVG GTSNSTAPVE RNLHLDETRS RSIPGNTLEI PMFAAPEVGN FARSQSSRNV
401: TNGNLNSASS VSRTGSTTSV PPPPPPSSNL AWTSYQNSPH YQRRRTERSE LARRSLLSSL AADATNQRSG DHPTLRSLAP PASSDGLVLQ PGGDNSQMHN
501: RAYSRAGPLF DRQGDSVVGI PHPLRALAAA SRGRSRLMVS QMQNVLDVMR RDANNNNLRL EDVMLLNHSV LFDGATGHDR YRDMRLDVDN MSYEELLALE
601: ERIGDVCTGV NEETISNRLK QRKYKSNTKS PQDAEPCCVC QEEYTEGEDM GTLECGHEFH SQCIKEWLKQ KNLCPICKTT GLNTAKKRRI A
Arabidopsis Description
RHG1AProbable E3 ubiquitin-protein ligase RHG1A [Source:UniProtKB/Swiss-Prot;Acc:Q9FMM4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.