Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Bra019499.1-P | Field mustard | nucleus | 73.24 | 95.12 |
CDX77848 | Canola | nucleus | 93.43 | 93.87 |
AT3G47180.1 | Thale cress | cytosol | 81.22 | 82.38 |
KRH16389 | Soybean | nucleus | 43.19 | 44.88 |
PGSC0003DMT400020398 | Potato | nucleus | 37.09 | 44.63 |
KRH64669 | Soybean | nucleus | 41.78 | 44.06 |
VIT_18s0001g02280.t01 | Wine grape | nucleus | 42.72 | 43.96 |
KRH17980 | Soybean | nucleus | 41.78 | 43.84 |
Solyc12g010500.1.1 | Tomato | nucleus | 36.62 | 43.58 |
KRH53246 | Soybean | nucleus | 36.62 | 42.62 |
CDX93901 | Canola | nucleus | 27.7 | 24.58 |
CDY53710 | Canola | nucleus | 27.7 | 24.38 |
CDY27083 | Canola | nucleus | 18.31 | 17.81 |
CDX91624 | Canola | nucleus | 18.31 | 17.73 |
CDY25357 | Canola | nucleus | 24.88 | 16.56 |
CDY24595 | Canola | nucleus | 24.41 | 16.51 |
CDY42218 | Canola | nucleus | 24.88 | 15.87 |
CDY33429 | Canola | nucleus | 24.41 | 15.76 |
CDY13429 | Canola | cytosol | 18.31 | 15.12 |
CDY31919 | Canola | nucleus | 19.25 | 15.02 |
CDY00512 | Canola | nucleus | 19.25 | 15.02 |
CDX91625 | Canola | cytosol | 15.49 | 14.41 |
CDY27082 | Canola | cytosol | 15.02 | 13.45 |
CDX97032 | Canola | plastid | 21.13 | 13.43 |
CDY71882 | Canola | plastid | 21.13 | 12.86 |
CDX85750 | Canola | nucleus | 21.13 | 11.66 |
CDY32973 | Canola | nucleus | 22.07 | 11.46 |
CDX68213 | Canola | nucleus, plastid | 18.31 | 11.17 |
CDY43590 | Canola | nucleus | 22.07 | 11.16 |
CDY11092 | Canola | cytosol, plastid | 17.84 | 10.92 |
CDX73013 | Canola | plastid | 17.84 | 10.7 |
CDY60141 | Canola | plastid | 17.84 | 10.64 |
CDX83878 | Canola | nucleus | 16.9 | 10.08 |
CDY24110 | Canola | nucleus | 21.6 | 10.0 |
CDY26006 | Canola | nucleus | 21.6 | 9.96 |
CDX95473 | Canola | nucleus | 21.6 | 9.91 |
CDX96741 | Canola | nucleus | 16.9 | 9.89 |
CDY17114 | Canola | nucleus | 24.41 | 9.79 |
CDX79718 | Canola | nucleus | 24.41 | 9.79 |
CDY68521 | Canola | nucleus | 20.19 | 9.75 |
CDY40109 | Canola | nucleus | 8.45 | 9.68 |
CDX97044 | Canola | nucleus | 23.0 | 9.61 |
CDX97629 | Canola | nucleus | 19.72 | 9.52 |
CDX75805 | Canola | cytosol | 19.72 | 9.48 |
CDY68658 | Canola | nucleus | 20.66 | 9.38 |
CDY46757 | Canola | nucleus | 23.47 | 9.38 |
CDX82450 | Canola | nucleus | 19.72 | 9.38 |
CDY63645 | Canola | nucleus | 20.19 | 9.31 |
CDY55435 | Canola | nucleus | 23.0 | 9.28 |
CDX88140 | Canola | nucleus | 20.66 | 9.13 |
CDX78393 | Canola | nucleus | 21.13 | 9.11 |
CDY13433 | Canola | nucleus | 19.72 | 9.01 |
CDY55839 | Canola | nucleus | 20.66 | 9.0 |
CDY25871 | Canola | nucleus | 20.19 | 9.0 |
CDX69813 | Canola | mitochondrion | 22.07 | 8.82 |
CDY68424 | Canola | nucleus | 22.07 | 8.75 |
CDX70363 | Canola | nucleus | 19.72 | 8.64 |
CDY17061 | Canola | nucleus | 23.94 | 8.42 |
CDY43220 | Canola | nucleus | 23.94 | 8.37 |
CDY22376 | Canola | nucleus | 23.94 | 8.29 |
CDY37230 | Canola | nucleus | 22.54 | 8.15 |
CDY62314 | Canola | nucleus | 22.54 | 8.11 |
CDX71531 | Canola | nucleus | 23.0 | 7.69 |
CDY47948 | Canola | nucleus | 7.04 | 2.98 |
CDY69560 | Canola | nucleus | 4.23 | 1.77 |
CDY36635 | Canola | nucleus | 4.23 | 1.51 |
Protein Annotations
EnsemblPlants:CDY67192 | EnsemblPlantsGene:GSBRNA2T00059731001 | Gene3D:3.30.40.10 | GO:A0A078JP85 | InterPro:IPR001841 | InterPro:IPR013083 |
InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR14155 | PANTHER:PTHR14155:SF112 | PFAM:PF13639 | PFscan:PS50089 |
ProteinID:CDY67192 | ProteinID:CDY67192.1 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI0004EE9055 |
UniProt:A0A078JP85 | MapMan:35.1 | : | : | : | : |
Description
BnaA06g38750DBnaA06g38750D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JP85]
Coordinates
chrLK035847:+:9942..10742
Molecular Weight (calculated)
24509.5 Da
IEP (calculated)
3.743
GRAVY (calculated)
-0.924
Length
213 amino acids
Sequence
(BLAST)
(BLAST)
001: MDNQEEDPKQ PPNKFPDLTV FEQANSEVAL AASQANSHFP PRIHDLASSR FSMMESDGES EDEDEDEEEI NDNYYEYFDS NGFGEDEDEI NEYLEDQESN
101: SYVEEDDFLE EEDEIDPDQL SYEELIALGE FIGVEKRGLT QTEISTCLKP SSYEFSHNKN EIDRCVVCQM EFEEGESLVV LRLCNHPYHS ECITKWLQTK
201: KVCPICGSEP SHG
101: SYVEEDDFLE EEDEIDPDQL SYEELIALGE FIGVEKRGLT QTEISTCLKP SSYEFSHNKN EIDRCVVCQM EFEEGESLVV LRLCNHPYHS ECITKWLQTK
201: KVCPICGSEP SHG
001: MDNQEEEPKQ PPNKLPDLAL FEQANSEVAL AASQANSHFA HAMHDSSPSM ISMIESDEES EDEEEINENY YEYFDSNGFG VDEDEINEFL EDQESNSNLE
101: EEDDFLEEED EIDPDQLSYE ELIALGDFIG VENRGLTPIE ISTCLNASTY VFSHNKNEID RCVVCQMEFE ERESLVVLRP CDHPYHSECI TKWLETKKIC
201: PICCSEPSVS
101: EEDDFLEEED EIDPDQLSYE ELIALGDFIG VENRGLTPIE ISTCLNASTY VFSHNKNEID RCVVCQMEFE ERESLVVLRP CDHPYHSECI TKWLETKKIC
201: PICCSEPSVS
Arabidopsis Description
At3g47180 [Source:UniProtKB/TrEMBL;Acc:Q9SD55]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.