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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • cytosol 1
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra019499.1-P Field mustard nucleus 73.24 95.12
CDX77848 Canola nucleus 93.43 93.87
AT3G47180.1 Thale cress cytosol 81.22 82.38
KRH16389 Soybean nucleus 43.19 44.88
PGSC0003DMT400020398 Potato nucleus 37.09 44.63
KRH64669 Soybean nucleus 41.78 44.06
VIT_18s0001g02280.t01 Wine grape nucleus 42.72 43.96
KRH17980 Soybean nucleus 41.78 43.84
Solyc12g010500.1.1 Tomato nucleus 36.62 43.58
KRH53246 Soybean nucleus 36.62 42.62
CDX93901 Canola nucleus 27.7 24.58
CDY53710 Canola nucleus 27.7 24.38
CDY27083 Canola nucleus 18.31 17.81
CDX91624 Canola nucleus 18.31 17.73
CDY25357 Canola nucleus 24.88 16.56
CDY24595 Canola nucleus 24.41 16.51
CDY42218 Canola nucleus 24.88 15.87
CDY33429 Canola nucleus 24.41 15.76
CDY13429 Canola cytosol 18.31 15.12
CDY31919 Canola nucleus 19.25 15.02
CDY00512 Canola nucleus 19.25 15.02
CDX91625 Canola cytosol 15.49 14.41
CDY27082 Canola cytosol 15.02 13.45
CDX97032 Canola plastid 21.13 13.43
CDY71882 Canola plastid 21.13 12.86
CDX85750 Canola nucleus 21.13 11.66
CDY32973 Canola nucleus 22.07 11.46
CDX68213 Canola nucleus, plastid 18.31 11.17
CDY43590 Canola nucleus 22.07 11.16
CDY11092 Canola cytosol, plastid 17.84 10.92
CDX73013 Canola plastid 17.84 10.7
CDY60141 Canola plastid 17.84 10.64
CDX83878 Canola nucleus 16.9 10.08
CDY24110 Canola nucleus 21.6 10.0
CDY26006 Canola nucleus 21.6 9.96
CDX95473 Canola nucleus 21.6 9.91
CDX96741 Canola nucleus 16.9 9.89
CDY17114 Canola nucleus 24.41 9.79
CDX79718 Canola nucleus 24.41 9.79
CDY68521 Canola nucleus 20.19 9.75
CDY40109 Canola nucleus 8.45 9.68
CDX97044 Canola nucleus 23.0 9.61
CDX97629 Canola nucleus 19.72 9.52
CDX75805 Canola cytosol 19.72 9.48
CDY68658 Canola nucleus 20.66 9.38
CDY46757 Canola nucleus 23.47 9.38
CDX82450 Canola nucleus 19.72 9.38
CDY63645 Canola nucleus 20.19 9.31
CDY55435 Canola nucleus 23.0 9.28
CDX88140 Canola nucleus 20.66 9.13
CDX78393 Canola nucleus 21.13 9.11
CDY13433 Canola nucleus 19.72 9.01
CDY55839 Canola nucleus 20.66 9.0
CDY25871 Canola nucleus 20.19 9.0
CDX69813 Canola mitochondrion 22.07 8.82
CDY68424 Canola nucleus 22.07 8.75
CDX70363 Canola nucleus 19.72 8.64
CDY17061 Canola nucleus 23.94 8.42
CDY43220 Canola nucleus 23.94 8.37
CDY22376 Canola nucleus 23.94 8.29
CDY37230 Canola nucleus 22.54 8.15
CDY62314 Canola nucleus 22.54 8.11
CDX71531 Canola nucleus 23.0 7.69
CDY47948 Canola nucleus 7.04 2.98
CDY69560 Canola nucleus 4.23 1.77
CDY36635 Canola nucleus 4.23 1.51
Protein Annotations
EnsemblPlants:CDY67192EnsemblPlantsGene:GSBRNA2T00059731001Gene3D:3.30.40.10GO:A0A078JP85InterPro:IPR001841InterPro:IPR013083
InterPro:Znf_RINGInterPro:Znf_RING/FYVE/PHDPANTHER:PTHR14155PANTHER:PTHR14155:SF112PFAM:PF13639PFscan:PS50089
ProteinID:CDY67192ProteinID:CDY67192.1SEG:segSMART:SM00184SUPFAM:SSF57850UniParc:UPI0004EE9055
UniProt:A0A078JP85MapMan:35.1::::
Description
BnaA06g38750DBnaA06g38750D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JP85]
Coordinates
chrLK035847:+:9942..10742
Molecular Weight (calculated)
24509.5 Da
IEP (calculated)
3.743
GRAVY (calculated)
-0.924
Length
213 amino acids
Sequence
(BLAST)
001: MDNQEEDPKQ PPNKFPDLTV FEQANSEVAL AASQANSHFP PRIHDLASSR FSMMESDGES EDEDEDEEEI NDNYYEYFDS NGFGEDEDEI NEYLEDQESN
101: SYVEEDDFLE EEDEIDPDQL SYEELIALGE FIGVEKRGLT QTEISTCLKP SSYEFSHNKN EIDRCVVCQM EFEEGESLVV LRLCNHPYHS ECITKWLQTK
201: KVCPICGSEP SHG
Best Arabidopsis Sequence Match ( AT3G47180.1 )
(BLAST)
001: MDNQEEEPKQ PPNKLPDLAL FEQANSEVAL AASQANSHFA HAMHDSSPSM ISMIESDEES EDEEEINENY YEYFDSNGFG VDEDEINEFL EDQESNSNLE
101: EEDDFLEEED EIDPDQLSYE ELIALGDFIG VENRGLTPIE ISTCLNASTY VFSHNKNEID RCVVCQMEFE ERESLVVLRP CDHPYHSECI TKWLETKKIC
201: PICCSEPSVS
Arabidopsis Description
At3g47180 [Source:UniProtKB/TrEMBL;Acc:Q9SD55]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.