CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY26031
CDY26032

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G42940.1	CDY26031	AT1G52890.1	12646039
AT5G42940.1	CDY26032	AT1G52890.1	12646039

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra027467.1-P	Field mustard	nucleus	98.05	98.05
CDY43590	Canola	nucleus	95.85	93.35
KRH05664	Soybean	nucleus	18.54	62.81
CDY22376	Canola	nucleus	75.61	50.41
CDX71531	Canola	nucleus	77.56	49.92
AT5G42940.1	Thale cress	nucleus	77.56	46.02
CDY17114	Canola	nucleus	52.2	40.3
CDY43220	Canola	nucleus	55.85	37.6
CDY17061	Canola	nucleus	55.12	37.29
CDY47948	Canola	nucleus	32.2	26.24
VIT_18s0001g10260.t01	Wine grape	nucleus	45.12	25.2
Solyc04g078680.2.1	Tomato	nucleus	43.9	24.93
CDY13429	Canola	cytosol	15.12	24.03
Solyc12g088740.1.1	Tomato	nucleus	39.76	23.52
PGSC0003DMT400039849	Potato	nucleus	39.51	23.38
KRH52013	Soybean	nucleus	40.24	23.31
KRH61306	Soybean	nucleus	36.83	23.09
PGSC0003DMT400020528	Potato	nucleus	37.56	22.35
CDY37230	Canola	nucleus	31.95	22.24
CDX77848	Canola	nucleus	11.46	22.17
CDY62314	Canola	nucleus	31.95	22.13
CDY67192	Canola	nucleus	11.46	22.07
KRH61311	Soybean	nucleus	39.27	21.93
CDX97032	Canola	plastid	17.07	20.9
CDY71882	Canola	plastid	17.07	20.0
CDX93901	Canola	nucleus	11.46	19.58
CDY53710	Canola	nucleus	11.46	19.42
CDY40109	Canola	nucleus	8.78	19.35
CDX68213	Canola	nucleus, plastid	16.34	19.2
CDX85750	Canola	nucleus	18.05	19.17
CDY60141	Canola	plastid	16.34	18.77
CDY11092	Canola	cytosol, plastid	15.85	18.68
CDX73013	Canola	plastid	16.1	18.59
CDY27083	Canola	nucleus	9.76	18.26
CDX83878	Canola	nucleus	15.85	18.21
CDX91624	Canola	nucleus	9.76	18.18
CDX96741	Canola	nucleus	15.85	17.86
CDY24110	Canola	nucleus	19.76	17.61
CDY26006	Canola	nucleus	19.76	17.53
CDY25871	Canola	nucleus	20.24	17.36
CDY68658	Canola	nucleus	19.27	16.84
CDY55839	Canola	nucleus	20.0	16.77
CDX88140	Canola	nucleus	19.51	16.6
CDX79718	Canola	nucleus	21.22	16.38
CDY46757	Canola	nucleus	21.22	16.32
CDX91625	Canola	cytosol	9.02	16.16
CDY55435	Canola	nucleus	20.73	16.1
CDX82450	Canola	nucleus	17.32	15.85
CDY68424	Canola	nucleus	20.73	15.83
CDX75805	Canola	cytosol	17.07	15.8
CDY31919	Canola	nucleus	10.49	15.75
CDX97629	Canola	nucleus	16.83	15.65
CDY00512	Canola	nucleus	10.24	15.38
CDY68521	Canola	nucleus	16.34	15.19
CDX95473	Canola	nucleus	17.07	15.09
CDY63645	Canola	nucleus	16.83	14.94
CDY24595	Canola	nucleus	11.46	14.92
CDY27082	Canola	cytosol	8.54	14.71
CDY25357	Canola	nucleus	11.46	14.69
CDY13433	Canola	nucleus	16.59	14.59
CDY33429	Canola	nucleus	11.71	14.55
CDX70363	Canola	nucleus	17.07	14.4
CDX78393	Canola	nucleus	17.32	14.37
CDY42218	Canola	nucleus	11.46	14.07
CDX97044	Canola	nucleus	17.32	13.92
CDX69813	Canola	mitochondrion	17.56	13.51
CDY69560	Canola	nucleus	12.2	9.82
CDY36635	Canola	nucleus	12.2	8.39

Protein Annotations

EnsemblPlants:CDY32973	EnsemblPlantsGene:GSBRNA2T00053189001	Gene3D:3.30.40.10	GO:A0A078H7U5	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR14155	PANTHER:PTHR14155:SF464	PFAM:PF13639	PFscan:PS50089
ProteinID:CDY32973	ProteinID:CDY32973.1	SEG:seg	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0004EF1B9D
UniProt:A0A078H7U5	MapMan:35.1	:	:	:	:

Description

BnaA09g16200DBnaA09g16200D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H7U5]

Coordinates

chrLK032303:+:440346..443112

Molecular Weight (calculated)

45021.2 Da

IEP (calculated)

5.529

GRAVY (calculated)

-0.707

Length

410 amino acids

Sequence
(BLAST)

001: MQEERAILGF LSEALNFELG SSTSIDAVTD HWDHIHSLGD NDLHDYMIAN PEPSHEEQHD LHSEASSSGT KNEAASSHSD QRRNEDSEQP PSAPNQHVQN
101: SNSPALSIPP FQWTEVSLAA GSSTSTVPPV ERNLHLDETR PRSIPESPLF VPAPELRNAT SGDLNVASAV SRTGSATGVQ PPSYQNLPHQ QRRRSELARR
201: SLISSLAGSG DHPTLGASPD GLVLQPGGDR QGDGVAGAHH SFRALAAASR GRSSRLTVSQ MQNILDVMRR DPNHNLRLED VMLLNQSLLF DGAGGMHDRY
301: RDMRLDVDNM SYEELLALEE RIGDVCTGVN EETISNRLKQ RKFKSSTKSP QDAEPCCICQ EEYIEGEDMG ALECGHDFHS QCIKEWLKQK NICPICKTTG
401: LNTAKKRKIG

Best Arabidopsis Sequence Match ( AT1G45180.2 )
(BLAST)

001: MSSAADTNPT FANSVYHEKR GLQRFNIGEA SSSGTKNEGA SLTEQWKGIG RFEEQRNDKL ELSPLFVQPS NGSRVVRDVN LNAEYNEHLE DMNPVTVHPG
101: HFEVNGLRSE FLLDNSVRAG SSVDGRRASC KRKALDASGG QSSSTGGFRE FQRGVSSSWI SGPTYYSPAM TANDLNISLD HGRRGLVSSA VPNLSPPTIT
201: ESSSRNYPVW VNPTYQQETV SNFAPSLNSP GLIPADHQQI SMRYGHALGN FASQNPNAPA THMPPVSRNT FQWNTSPVAA VISSSSATPV DRNVIHRNAT
301: RQRSNTLEIP LFVPAPELRN VAHGHISRNA SGARHVASSS SRTSVQPSPS SPALTPYQNN SLHNQRRLSE NFRRSLLSSL VTQQRAARSL AHPASPNEHV
401: LQSGGDNTSQ VHNRASSRAG PRQGQDATGI SHSLRGLAST SRGRTRMGAS EIRNILEHMR RAGNLRLEDV MLLNQSIMLG AADIHDRYRD MRLDVDNMTY
501: EELLSLEERI GDVCTGLNEE TISNRLKQQK YKSSTRSSQE VEPCCVCQEE YKEEEEIGRL ECGHDFHSQC IKEWLKQKNL CPICKTTGLN TANKPQR

Arabidopsis Description

F27F5.26 [Source:UniProtKB/TrEMBL;Acc:Q9MAJ1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.