CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH22137
KRH27201

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G42940.1	KRH22137	AT1G52890.1	12646039
AT5G42940.1	KRH27201	AT1G52890.1	12646039

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH61306	Soybean	nucleus	86.78	97.4
KRH52013	Soybean	nucleus	87.6	90.82
KRH05664	Soybean	nucleus	12.94	78.51
KRH05663	Soybean	cytosol	45.1	56.97
VIT_18s0001g10260.t01	Wine grape	nucleus	55.04	55.04
Solyc04g078680.2.1	Tomato	nucleus	44.14	44.88
PGSC0003DMT400020528	Potato	nucleus	41.55	44.27
PGSC0003DMT400039849	Potato	nucleus	39.78	42.14
Solyc12g088740.1.1	Tomato	nucleus	39.78	42.14
Bra027467.1-P	Field mustard	nucleus	22.34	40.0
CDY43590	Canola	nucleus	22.89	39.91
CDY32973	Canola	nucleus	21.93	39.27
CDY22376	Canola	nucleus	31.34	37.4
Bra033652.1-P	Field mustard	nucleus	31.2	37.24
CDX71531	Canola	nucleus	31.61	36.42
CDY17114	Canola	nucleus	25.75	35.59
AT5G42940.1	Thale cress	nucleus	32.97	35.02
KRH50319	Soybean	nucleus	34.06	34.97
AT1G45180.3	Thale cress	nucleus	30.52	34.73
CDY17061	Canola	nucleus	28.61	34.65
CDY43220	Canola	nucleus	28.61	34.48
KRH70661	Soybean	mitochondrion, nucleus	33.11	33.33
Bra014043.1-P	Field mustard	nucleus	26.02	33.16
KRH53246	Soybean	nucleus	7.08	28.42
KRH64669	Soybean	nucleus	7.36	26.73
KRH27487	Soybean	cytosol, nucleus, plastid	8.17	24.29
KRH52597	Soybean	nucleus	17.85	24.21
KRH04957	Soybean	nucleus	17.44	24.06
KRH48568	Soybean	nucleus	11.58	24.01
KRH16134	Soybean	nucleus	17.98	23.78
KRH17980	Soybean	nucleus	6.54	23.65
KRH20832	Soybean	nucleus	7.9	23.48
KRH39137	Soybean	nucleus	11.44	22.76
KRH16389	Soybean	nucleus	6.27	22.44
KRG95955	Soybean	nucleus	16.76	22.4
KRH29702	Soybean	nucleus	7.49	22.18
KRH41763	Soybean	nucleus	11.31	22.02
KRH67668	Soybean	nucleus	16.48	21.96
KRH24699	Soybean	nucleus	7.36	21.77
KRH32434	Soybean	nucleus	15.67	21.34
KRH19845	Soybean	nucleus	15.67	20.91
KRH61936	Soybean	nucleus	15.67	20.65
KRH30071	Soybean	cytosol	9.67	20.64
KRH22017	Soybean	nucleus	14.31	19.89
KRH60461	Soybean	nucleus	11.58	19.72
KRH26195	Soybean	nucleus	12.13	19.43
KRH55161	Soybean	nucleus	11.99	19.21
KRH55165	Soybean	nucleus	7.9	18.65
KRG90628	Soybean	nucleus	8.31	18.21
KRH55090	Soybean	nucleus	8.72	17.2
KRH36126	Soybean	cytosol, mitochondrion, nucleus	8.17	16.9
KRH04591	Soybean	nucleus	7.49	16.32
KRH04592	Soybean	nucleus	7.22	15.87

Protein Annotations

EntrezGene:100784575	Gene3D:3.30.40.10	MapMan:35.1	EMBL:ACUP02002161	EnsemblPlantsGene:GLYMA_04G039800	GO:GO:0003674
GO:GO:0003824	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0043161	GO:GO:0061630	InterPro:IPR001841
InterPro:IPR013083	UniProt:K7KHZ0	ProteinID:KRH61310.1	EnsemblPlants:KRH61311	ProteinID:KRH61311	ProteinID:KRH61311.1
ProteinID:KRH61312.1	ProteinID:KRH61313.1	PFAM:PF13639	PFscan:PS50089	PANTHER:PTHR14155	PANTHER:PTHR14155:SF464
SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0002966A2D	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

hypothetical protein

Coordinates

chr4:-:3185822..3195811

Molecular Weight (calculated)

79312.2 Da

IEP (calculated)

5.795

GRAVY (calculated)

-0.657

Length

734 amino acids

Sequence
(BLAST)

001: MQGQRGTVVS MPETLEFDCG SASGNSTADP QICWNNVNPA ENQIPDYILS PCDMNSSYEN SIINHEWQNL SGWSLGEPSS SNTPNEINNN EQKRELGWSS
101: TITAGALAGP SLEERRLEPT NALSLDNVNT GPIYICSPNS HLMSQNLNLN AGLADSGSDD SQHLELPNLN KSSGSANECI PPNVGSGSFL LPSGNNAFLV
201: EDTDGRPSCS LDTRRVSCKR KAVEGNNGQS SDAGSSSYSQ HTDGSAWHTI PTQDNAGSSS RRSIPSEEVN ARLGLGIGDE ASENVSDSNT AGCSESFHRN
301: FRLRLNPSNP ANSVPPTAFS TGSMIRHSGV SPSSQVSQRL HSVDNSMNSR SAPPIDNVVP QSQPHVIHVP ALPRNRQSFR WSGGSSSRNI HSSNSIICPA
401: RDQEDASSRR MSRNMLEHPV FQPATDLSNL VQNPTVRASS SSSVNLSIPG NVASSQTGSN PATNPSSAPT WVSPPNPPQH PQRLSEYVRR SLFSPSSDAT
501: GSPSNNFSSL RSGFSTSEPR ALSSGSGANP RSSSWLERQG GSEFGIPYSL RTLAVASEGS SRLVSELRNV LGLMRRGGNV RFEVSFDEPV DLKAQGLGRC
601: WEEKRNRPRL DVVILEHQSF LSRIADVHDR HRDMRLDVDN MSYEELLALE ERIGNVSTGL SEETLSKLLK QRKHSVEKGS ETDAEPCCVC QEDYGDGNDI
701: GTLDCGHDFH SSCIKQWLMH KNLCPICKTT GLAT

Best Arabidopsis Sequence Match ( AT1G45180.1 )
(BLAST)

001: MQGERASLGS LSKALNFERG STSSNAVVDQ QIRWENLHNY GDNDLQDYMS SAADTNPTFA NSVYHEKRGL QRFNIGEASS SGTKNEGASL TEQWKGIGRF
101: EEQRNDKLEL SPLFVQPSNG SRVVRDVNLN AEYNEHLEDM NPVTVHPGHF EVNGLRSEFL LDNSVRAGSS VDGRRASCKR KALDASGGQS SSTGGFREFQ
201: RGVSSSWISG PTYYSPAMTA NDLNISLDHG RRGLVSSAVP NLSPPTITES SSRNYPVWVN PTYQQETVSN FAPSLNSPGL IPADHQQISM RYGHALGNFA
301: SQNPNAPATH MPPVSRNTFQ WNTSPVAAVI SSSSATPVDR NVIHRNATRQ RSNTLEIPLF VPAPELRNVA HGHISRNASG ARHVASSSSR TSVQPSPSSP
401: ALTPYQNNSL HNQRRLSENF RRSLLSSLVT QQRAARSLAH PASPNEHVLQ SGGDNTSQVH NRASSRAGPR QGQDATGISH SLRGLASTSR GRTRMGASEI
501: RNILEHMRRA GNLRLEDVML LNQSIMLGAA DIHDRYRDMR LDVDNMTYEE LLSLEERIGD VCTGLNEETI SNRLKQQKYK SSTRSSQEVE PCCVCQEEYK
601: EEEEIGRLEC GHDFHSQCIK EWLKQKNLCP ICKTTGLNTA NKPQR

Arabidopsis Description

F27F5.26 [Source:UniProtKB/TrEMBL;Acc:Q9MAJ1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.