Factsheet for Bra033652.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra018998.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G42940.1	Bra018998.1-P	AT1G52890.1	12646039

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY22376	Canola	nucleus	99.67	99.67
Bra027467.1-P	Field mustard	nucleus	50.57	75.85
AT5G42940.1	Thale cress	nucleus	76.26	67.87
KRH05664	Soybean	nucleus	12.85	65.29
Bra014043.1-P	Field mustard	nucleus	45.69	48.78
Bra036336.1-P	Field mustard	nucleus	34.8	42.54
VIT_18s0001g10260.t01	Wine grape	nucleus	41.3	34.6
KRH61306	Soybean	nucleus	35.12	33.03
KRH52013	Soybean	nucleus	37.4	32.49
Solyc04g078680.2.1	Tomato	nucleus	37.56	31.99
Solyc12g088740.1.1	Tomato	nucleus	35.77	31.75
KRH61311	Soybean	nucleus	37.24	31.2
PGSC0003DMT400039849	Potato	nucleus	34.96	31.02
Bra015221.1-P	Field mustard	nucleus	29.27	30.15
Bra024009.1-P	Field mustard	nucleus	8.46	29.71
PGSC0003DMT400020528	Potato	nucleus	32.85	29.32
Bra039842.1-P	Field mustard	nucleus	27.8	28.64
Bra019499.1-P	Field mustard	nucleus	7.48	28.05
Bra040450.1-P	Field mustard	nucleus	8.62	21.9
Bra003830.1-P	Field mustard	nucleus, plastid	12.03	21.83
Bra015967.1-P	Field mustard	nucleus	11.71	20.17
Bra038109.1-P	Field mustard	nucleus	15.61	20.0
Bra016574.1-P	Field mustard	nucleus	11.54	19.83
Bra039659.1-P	Field mustard	nucleus	14.8	19.78
Bra023101.1-P	Field mustard	nucleus	17.07	19.7
Bra024007.1-P	Field mustard	nucleus	14.47	19.06
Bra006070.1-P	Field mustard	nucleus	14.96	18.59
Bra022580.1-P	Field mustard	cytosol	5.37	18.33
Bra001582.1-P	Field mustard	nucleus	13.01	18.31
Bra027282.1-P	Field mustard	nucleus	13.01	17.98
Bra017205.1-P	Field mustard	nucleus	15.61	17.88
Bra009015.1-P	Field mustard	plastid	14.8	17.07
Bra022466.1-P	Field mustard	nucleus	8.78	16.67
Bra038240.1-P	Field mustard	nucleus	8.94	16.52
Bra009800.1-P	Field mustard	nucleus	9.76	14.63
Bra022579.1-P	Field mustard	cytosol	2.93	13.64
Bra028576.1-P	Field mustard	cytosol	5.37	11.66
Bra028293.1-P	Field mustard	nucleus	4.23	10.88

Protein Annotations

EnsemblPlants:Bra033652.1	EnsemblPlants:Bra033652.1-P	EnsemblPlantsGene:Bra033652	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	ncoils:Coil	PANTHER:PTHR14155	PANTHER:PTHR14155:SF464	PFAM:PF13639
PFscan:PS50089	SEG:seg	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI000253F813	UniProt:M4EXW3
MapMan:35.1	:	:	:	:	:

Description

AT5G42940 (E=4e-210) | zinc finger (C3HC4-type RING finger) family protein

Coordinates

chrA06:+:25795855..25798069

Molecular Weight (calculated)

66784.0 Da

IEP (calculated)

5.790

GRAVY (calculated)

-0.696

Length

615 amino acids

Sequence
(BLAST)

001: MQGERASLGY LSEGLNFEHG STSSNGLMDH WDGLGDNDLQ DYMIANSESL AHSVYPEQHR FSLGEEASSS GTKNEASSHN EQLRNEIIDL DSDSEQPSGD
101: NQNVNLNAEY IELDEDIDVV EANGSGNRAS QPGRPFQETS VRTGSSVDAS CKRKAIEGSS SGQSSLGGYH HGESSSSWTP VSTEYRSVNG LNISGSRGEV
201: SATASNFLVS SSRNTCVRSN PSETVSPAAF SAGTVVRRPV PPPHSNLSRL VPSDHHGQSL GNIFSRNPNP PAPVSRNMLP PLQWTESSLA GESFNSTVPT
301: ERNNLHLEDT RSRSITAASV LENPLFNPAP DLSRNANLSI ASSSSVSRTG SSTGVQAPSS NLAWTPHRNL PPHQRRRSEL AHRSLISSLS ADARSGDHHP
401: PLRSLAPPAP QDGLVLQPGG GDSSRAYSRA GLWLDRQVDS LVGAPQSLRA LAAASRGRNR LMVSQMQNIL EVMRRDPNHN LRLEDVMLLN QSGIFDGAAG
501: MHDRYRDMRL DVDNMSYEEL LALEERIGDV CTGVNEETIS NRLKQSKYKS STKSPEDAEP CCICQEEYTE GDDMGTLECG HEFHSQCIKE WLKQKNLCPI
601: CKTTGLNTAK KRKIG

Best Arabidopsis Sequence Match ( AT5G42940.1 )
(BLAST)

001: MQGERASLGY LSEALNFEHG SSSSNGVIDH WENIHSLGDN DLQDYMIANS ESNTSLANSV YHEQQGLRRF SLGEASSSGT KDEASSHNEQ RMETRCFDGR
101: GNEIIDLDPV FAQPSGTNQP VQNVNLNAEY IEIHEDINPY RGRSGFIEAN GPGTRVSQPG RSFEENGVGT GSSVEGRRAS CKRKALEGSI SQSSSGGYHD
201: FQRGESSSWT PGSTVFRPGN GLNISGSLDN GPRGMVSGTV PNFPVSAPNF PVSAIAESSS RNICVRSNPS DHQETVNPST FAAGTVVRRP VPPSQLNLSR
301: HLPADQHSLD LRPGQSFVVS RNPNSTPVSI PPGSRTMLPP FRWTGSSLVG GTSNSTAPVE RNLHLDETRS RSIPGNTLEI PMFAAPEVGN FARSQSSRNV
401: TNGNLNSASS VSRTGSTTSV PPPPPPSSNL AWTSYQNSPH YQRRRTERSE LARRSLLSSL AADATNQRSG DHPTLRSLAP PASSDGLVLQ PGGDNSQMHN
501: RAYSRAGPLF DRQGDSVVGI PHPLRALAAA SRGRSRLMVS QMQNVLDVMR RDANNNNLRL EDVMLLNHSV LFDGATGHDR YRDMRLDVDN MSYEELLALE
601: ERIGDVCTGV NEETISNRLK QRKYKSNTKS PQDAEPCCVC QEEYTEGEDM GTLECGHEFH SQCIKEWLKQ KNLCPICKTT GLNTAKKRRI A

Arabidopsis Description

RHG1AProbable E3 ubiquitin-protein ligase RHG1A [Source:UniProtKB/Swiss-Prot;Acc:Q9FMM4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.