CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
PTS1:	peroxisome
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH22137
KRH27201

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G42940.1	KRH22137	AT1G52890.1	12646039
AT5G42940.1	KRH27201	AT1G52890.1	12646039

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH61311	Soybean	nucleus	97.4	86.78
KRH52013	Soybean	nucleus	90.83	83.9
KRH05664	Soybean	nucleus	14.37	77.69
KRH05663	Soybean	cytosol	45.87	51.64
VIT_18s0001g10260.t01	Wine grape	nucleus	57.65	51.36
Solyc04g078680.2.1	Tomato	nucleus	45.87	41.55
PGSC0003DMT400020528	Potato	nucleus	43.12	40.93
PGSC0003DMT400039849	Potato	nucleus	41.44	39.11
Solyc12g088740.1.1	Tomato	nucleus	41.28	38.96
Bra027467.1-P	Field mustard	nucleus	23.55	37.56
CDY43590	Canola	nucleus	24.01	37.29
CDY32973	Canola	nucleus	23.09	36.83
CDY22376	Canola	nucleus	33.18	35.28
Bra033652.1-P	Field mustard	nucleus	33.03	35.12
CDX71531	Canola	nucleus	33.49	34.38
AT5G42940.1	Thale cress	nucleus	34.86	33.0
KRH50319	Soybean	nucleus	35.93	32.87
CDY17114	Canola	nucleus	26.15	32.2
CDY17061	Canola	nucleus	29.2	31.52
AT1G45180.3	Thale cress	nucleus	31.04	31.47
CDY43220	Canola	nucleus	29.05	31.2
KRH70661	Soybean	mitochondrion, nucleus	34.71	31.14
Bra014043.1-P	Field mustard	nucleus	26.15	29.69
KRH53246	Soybean	nucleus	7.34	26.23
KRH64669	Soybean	nucleus	7.49	24.26
KRH04957	Soybean	nucleus	19.57	24.06
KRH52597	Soybean	nucleus	19.42	23.48
KRH16134	Soybean	nucleus	19.88	23.42
KRH27487	Soybean	cytosol, nucleus, plastid	8.72	23.08
KRH20832	Soybean	nucleus	8.41	22.27
KRH48568	Soybean	nucleus	11.93	22.03
KRH17980	Soybean	nucleus	6.73	21.67
KRG95955	Soybean	nucleus	18.04	21.49
KRH29702	Soybean	nucleus	8.1	21.37
KRH67668	Soybean	nucleus	17.74	21.05
KRH24699	Soybean	nucleus	7.95	20.97
KRH39137	Soybean	nucleus	11.77	20.87
KRH41763	Soybean	nucleus	11.93	20.69
KRH16389	Soybean	nucleus	6.42	20.49
KRH61936	Soybean	nucleus	17.28	20.29
KRH32434	Soybean	nucleus	16.67	20.22
KRH19845	Soybean	nucleus	16.67	19.82
KRH30071	Soybean	cytosol	10.4	19.77
KRH26195	Soybean	nucleus	13.46	19.21
KRH55161	Soybean	nucleus	13.3	19.0
KRH22017	Soybean	nucleus	15.29	18.94
KRH60461	Soybean	nucleus	12.08	18.33
KRH55165	Soybean	nucleus	8.72	18.33
KRG90628	Soybean	nucleus	8.72	17.01
KRH55090	Soybean	nucleus	9.33	16.4
KRH36126	Soybean	cytosol, mitochondrion, nucleus	8.56	15.77
KRH04591	Soybean	nucleus	7.65	14.84
KRH04592	Soybean	nucleus	7.34	14.37

Protein Annotations

EntrezGene:100815573	Gene3D:3.30.40.10	MapMan:35.1	EMBL:ACUP02002160	EnsemblPlantsGene:GLYMA_04G039700	GO:GO:0003674
GO:GO:0003824	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0043161	GO:GO:0061630	UniProt:I1JTK5
InterPro:IPR001841	InterPro:IPR013083	EnsemblPlants:KRH61306	ProteinID:KRH61306	ProteinID:KRH61306.1	PFAM:PF13639
PFscan:PS50089	PANTHER:PTHR14155	PANTHER:PTHR14155:SF464	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI000294C58A
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:3169297..3176095

Molecular Weight (calculated)

70396.8 Da

IEP (calculated)

6.508

GRAVY (calculated)

-0.672

Length

654 amino acids

Sequence
(BLAST)

001: MNSSYDNSII NHEWQNLSGW SLGEPSSSNT PNEINNNEQK RELGWSSTIT AGALAGPSLE ERRLEPTNAL SLDNVNTGPI YICSPNSHLM SQNLNLNAGL
101: ADSGSDDSQH LELPNLNKSS GSANECIPPN VGSGSFLLPS GNNAFLVEDT DGRPSCSLDT RRVSCKRKAV EGNNGQSSDA GSSSYSQHTD GSAWHTIPTQ
201: DNAGSSSRRS IPSEEVNARL GLGIGDEASE NVSDSKTAGS SESFHRNFRL RLNPSNPANS VPPTAFSTGS MIRHSGVSPS SQVSQRLHSV NNSLNSRSAP
301: PIDNVVPQSQ PHVIHVPALP RNRQSFRWSG GSSSRNIHSS NSIISPARDQ EDASSRRMSR NMLEHPVFQP ATDLRNLVQN PTVRASSSSS VNLSIPGNVA
401: SSRTGSNPAT NPSSAPTWVS PPNPPQHPRR LSEYVRRSLF SPSSDAIGSP SNNYSSLRSG FSTSEPRALS SGSGANPRSS SWLERQGGSE FGIPYSLRTL
501: AVASEGSSRL VSELHNVLGR MRRGGNMRFE DVVILEHQSF LSGIADVHDR HGDMRLDVDN MSYEELLALE ERIGNVSTGL SEETLSKLLK QRKHSVEKGS
601: ETDAEPCCVC QEDYGDGNDI GTLDCGHDFH SSCIKQWLMQ KNLCPICKTT GLAT

Best Arabidopsis Sequence Match ( AT1G45180.2 )
(BLAST)

001: MSSAADTNPT FANSVYHEKR GLQRFNIGEA SSSGTKNEGA SLTEQWKGIG RFEEQRNDKL ELSPLFVQPS NGSRVVRDVN LNAEYNEHLE DMNPVTVHPG
101: HFEVNGLRSE FLLDNSVRAG SSVDGRRASC KRKALDASGG QSSSTGGFRE FQRGVSSSWI SGPTYYSPAM TANDLNISLD HGRRGLVSSA VPNLSPPTIT
201: ESSSRNYPVW VNPTYQQETV SNFAPSLNSP GLIPADHQQI SMRYGHALGN FASQNPNAPA THMPPVSRNT FQWNTSPVAA VISSSSATPV DRNVIHRNAT
301: RQRSNTLEIP LFVPAPELRN VAHGHISRNA SGARHVASSS SRTSVQPSPS SPALTPYQNN SLHNQRRLSE NFRRSLLSSL VTQQRAARSL AHPASPNEHV
401: LQSGGDNTSQ VHNRASSRAG PRQGQDATGI SHSLRGLAST SRGRTRMGAS EIRNILEHMR RAGNLRLEDV MLLNQSIMLG AADIHDRYRD MRLDVDNMTY
501: EELLSLEERI GDVCTGLNEE TISNRLKQQK YKSSTRSSQE VEPCCVCQEE YKEEEEIGRL ECGHDFHSQC IKEWLKQKNL CPICKTTGLN TANKPQR

Arabidopsis Description

F27F5.26 [Source:UniProtKB/TrEMBL;Acc:Q9MAJ1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.