CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH22137
KRH27201

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G42940.1	KRH22137	AT1G52890.1	12646039
AT5G42940.1	KRH27201	AT1G52890.1	12646039

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH61306	Soybean	nucleus	83.9	90.83
KRH61311	Soybean	nucleus	90.82	87.6
KRH05664	Soybean	nucleus	13.56	79.34
KRH05663	Soybean	cytosol	48.59	59.21
VIT_18s0001g10260.t01	Wine grape	nucleus	58.05	55.99
Solyc04g078680.2.1	Tomato	nucleus	47.18	46.26
PGSC0003DMT400020528	Potato	nucleus	43.79	44.99
Solyc12g088740.1.1	Tomato	nucleus	42.23	43.15
PGSC0003DMT400039849	Potato	nucleus	42.23	43.15
Bra027467.1-P	Field mustard	nucleus	23.73	40.98
CDY43590	Canola	nucleus	24.01	40.38
CDY32973	Canola	nucleus	23.31	40.24
CDY22376	Canola	nucleus	32.63	37.56
Bra033652.1-P	Field mustard	nucleus	32.49	37.4
CDX71531	Canola	nucleus	33.47	37.21
CDY17114	Canola	nucleus	27.68	36.91
AT1G45180.3	Thale cress	nucleus	32.77	35.97
AT5G42940.1	Thale cress	nucleus	35.03	35.89
CDY17061	Canola	nucleus	30.51	35.64
CDY43220	Canola	nucleus	30.23	35.14
KRH50319	Soybean	nucleus	35.17	34.83
Bra014043.1-P	Field mustard	nucleus	27.54	33.85
KRH70661	Soybean	mitochondrion, nucleus	34.04	33.06
KRH53246	Soybean	nucleus	7.06	27.32
KRH64669	Soybean	nucleus	7.49	26.24
KRH04957	Soybean	nucleus	18.36	24.44
KRH16134	Soybean	nucleus	18.93	24.14
KRH48568	Soybean	nucleus	12.01	24.01
KRH52597	Soybean	nucleus	18.22	23.84
KRH17980	Soybean	nucleus	6.78	23.65
KRH27487	Soybean	cytosol, nucleus, plastid	8.05	23.08
KRH39137	Soybean	nucleus	11.86	22.76
KRH16389	Soybean	nucleus	6.5	22.44
KRH20832	Soybean	nucleus	7.77	22.27
KRG95955	Soybean	nucleus	17.09	22.04
KRH67668	Soybean	nucleus	16.95	21.78
KRH29702	Soybean	nucleus	7.63	21.77
KRH24699	Soybean	nucleus	7.63	21.77
KRH32434	Soybean	nucleus	16.38	21.52
KRH41763	Soybean	nucleus	11.44	21.49
KRH19845	Soybean	nucleus	16.38	21.09
KRH61936	Soybean	nucleus	15.96	20.29
KRH22017	Soybean	nucleus	14.97	20.08
KRH30071	Soybean	cytosol	9.75	20.06
KRH60461	Soybean	nucleus	12.01	19.72
KRH26195	Soybean	nucleus	12.71	19.65
KRH55161	Soybean	nucleus	12.57	19.43
KRG90628	Soybean	nucleus	8.76	18.51
KRH55165	Soybean	nucleus	7.91	18.01
KRH36126	Soybean	cytosol, mitochondrion, nucleus	8.47	16.9
KRH55090	Soybean	nucleus	8.76	16.67
KRH04591	Soybean	nucleus	7.49	15.73
KRH04592	Soybean	nucleus	7.2	15.27

Protein Annotations

EntrezGene:100783014	Gene3D:3.30.40.10	MapMan:35.1	EMBL:ACUP02003402	EnsemblPlantsGene:GLYMA_06G041000	GO:GO:0003674
GO:GO:0003824	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0043161	GO:GO:0061630	InterPro:IPR001841
InterPro:IPR013083	UniProt:K7KT03	ProteinID:KRH52012.1	EnsemblPlants:KRH52013	ProteinID:KRH52013	ProteinID:KRH52013.1
ProteinID:KRH52014.1	ProteinID:KRH52015.1	ProteinID:KRH52016.1	PFAM:PF13639	PFscan:PS50089	PANTHER:PTHR14155
PANTHER:PTHR14155:SF464	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI000233904D	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:3104225..3111827

Molecular Weight (calculated)

76418.0 Da

IEP (calculated)

6.551

GRAVY (calculated)

-0.669

Length

708 amino acids

Sequence
(BLAST)

001: MQGQRGTVGS MPETLEFDCG SASGNSTVDQ QICWNNVNPA ENQIPDYILS PGDMNSSYGN SIINREWQNL SGWSLGEPSS SNTPNEVNNN EQKRELGWSS
101: TITAGALAGP RLEERRLEPA NALSLDNVNT GPMYTRSPNS RLMSQNLNLN AGLADNGSDN SQHLELPNLN KSSGSANECI PPNVGSGSFL LPSGNNGFLV
201: EDTDGRPGCS HDTRRVSCKR KAVEGNNGQS SDAGSSSYSQ HTDGSAWHTI PTQVNAGSSS RRSISSEQVN ARLGLGMGDG ASENVPDSNI AGSSESFHRN
301: FRLRLNPSNP PNSVPPTAFS TGSMIRHSGV PPSSQVSQRL HFVDNSLNLR SAPPIDNVVP QSQPLVIHVP ALPRNRQSFR WSGGSSSRNI HSSNSVICAD
401: RDQQDASSRR MSRNMLEHPV FVPATDLRNL VQNPTVRASS SSSENLSIPG NVASSSRTGS NPATNPSSAT TFSRSNPPQH PRRLSEYVRR SLFSPSSDAI
501: GSPSHNYSSL RSGLSTSEPR ALSSGSGANP RSASWLERQG DSEFGIPYSL RTLAVASEGG SSRLVSELRN VLGLMRRGGN VRFEDVVILD HQSFLSGIAD
601: VRDRHRDMRL DVDNMSYEEL LALEERIGNV STGLSEETVL KHLKQRKHSA EKGPQIDAEP CCVCQEDYGD EDDIGTLDCG HDFHSSCIKQ WLMHKNLCPI
701: CKTTGLAT

Best Arabidopsis Sequence Match ( AT1G45180.4 )
(BLAST)

001: MQGERASLGS LSKALNFERG STSSNAVVDQ QIRWENLHNY GDNDLQDYMS SAADTNPTFA NSVYHEKRGL QRFNIGEASS SGTKNEGASL TEQWKGIGRF
101: EEQRNDKLEL SPLFVQPSNG SRVVRDVNLN AEYNEHLEDM NPVTVHPGHF EVNGLRSEFL LDNSVRAGSS VDGRRASCKR KALDASGGQS SSTGGFREFQ
201: RGVSSSWISG PTYYSPAMTA NDLNISLDHG RRGLVSSAVP NLSPPTITES SSRNYPVWVN PTYQQETVSN FAPSLNSPGL IPADHQQISM RYGHALGNFA
301: SQNPNAPATH MPPVSRNTFQ WNTSPVAAVI SSSSATPVDR NVIHRNATRQ RSNTLEIPLF VPAPELRNVA HGHISRNASG ARHVASSSSR TSVQPSPSSP
401: ALTPYQNNSL HNQRRLSENF RRSLLSSLVT QQRAARSLAH PASPNEHVLQ SGGDNTSQVH NRASSRAGPR QGQDATGISH SLRGLASTSR GRTRMGASEI
501: RNILEHMRRA GNLRLEDVML LNQSIMLGAA DIHDRYRDMR LDVDNMTYEE LLSLEERIGD VCTGLNEETI SNRLKQQKYK SSTRSSQEVE PCCVCQEEYK
601: EEEEIGRLEC GHDFHSQCIK EWLKQKNLCP ICKTTGLNTA NKPQR

Arabidopsis Description

F27F5.26 [Source:UniProtKB/TrEMBL;Acc:Q9MAJ1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.