Factsheet for Bra014043.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY17061	Canola	nucleus	97.92	93.07
CDY43220	Canola	nucleus	96.53	91.3
AT1G45180.3	Thale cress	nucleus	65.8	58.76
Bra036336.1-P	Field mustard	nucleus	48.09	55.07
Bra027467.1-P	Field mustard	nucleus	35.94	50.49
KRH05664	Soybean	nucleus	10.42	49.59
Bra033652.1-P	Field mustard	nucleus	48.78	45.69
VIT_18s0001g10260.t01	Wine grape	nucleus	39.93	31.34
PGSC0003DMT400020528	Potato	nucleus	36.28	30.33
Solyc04g078680.2.1	Tomato	nucleus	37.5	29.92
Bra024009.1-P	Field mustard	nucleus	8.51	28.0
KRH52013	Soybean	nucleus	33.85	27.54
PGSC0003DMT400039849	Potato	nucleus	32.81	27.27
Solyc12g088740.1.1	Tomato	nucleus	32.64	27.13
KRH61306	Soybean	nucleus	29.69	26.15
KRH61311	Soybean	nucleus	33.16	26.02
Bra019499.1-P	Field mustard	nucleus	6.94	24.39
Bra039842.1-P	Field mustard	nucleus	24.48	23.62
Bra015221.1-P	Field mustard	nucleus	23.44	22.61
Bra040450.1-P	Field mustard	nucleus	7.81	18.59
Bra003830.1-P	Field mustard	nucleus, plastid	10.42	17.7
Bra015967.1-P	Field mustard	nucleus	10.94	17.65
Bra038109.1-P	Field mustard	nucleus	14.24	17.08
Bra016574.1-P	Field mustard	nucleus	10.59	17.04
Bra023101.1-P	Field mustard	nucleus	15.62	16.89
Bra039659.1-P	Field mustard	nucleus	13.19	16.52
Bra017205.1-P	Field mustard	nucleus	14.76	15.83
Bra001582.1-P	Field mustard	nucleus	11.81	15.56
Bra022580.1-P	Field mustard	cytosol	4.86	15.56
Bra006070.1-P	Field mustard	nucleus	13.19	15.35
Bra009015.1-P	Field mustard	plastid	13.89	15.01
Bra027282.1-P	Field mustard	nucleus	11.11	14.38
Bra024007.1-P	Field mustard	nucleus	11.63	14.35
Bra038240.1-P	Field mustard	nucleus	7.99	13.81
Bra022466.1-P	Field mustard	nucleus	7.29	12.96
Bra009800.1-P	Field mustard	nucleus	9.2	12.93
Bra022579.1-P	Field mustard	cytosol	2.6	11.36
Bra028576.1-P	Field mustard	cytosol	5.03	10.25
Bra028293.1-P	Field mustard	nucleus	3.65	8.79

Protein Annotations

EnsemblPlants:Bra014043.1	EnsemblPlants:Bra014043.1-P	EnsemblPlantsGene:Bra014043	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR14155	PANTHER:PTHR14155:SF464	PFAM:PF13639	PFscan:PS50089
SEG:seg	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0002546CC1	UniProt:M4DC31	MapMan:35.1

Description

AT1G45180 (E=9e-120) | zinc finger (C3HC4-type RING finger) family protein

Coordinates

chrA08:-:4181412..4184155

Molecular Weight (calculated)

62984.5 Da

IEP (calculated)

8.640

GRAVY (calculated)

-0.724

Length

576 amino acids

Sequence
(BLAST)

001: MQGERASIGS LSETMNFEHG STSSNPVAEQ QILWDNDLQN YMSSAAAVDT NTTMSNAVYH EPRDLHRFNL GEGSSSGTKN EAPSSHSEQW MQMGRFEERR
101: NDKLELNPLF MQQPSSTGNR VVRDVNLNAE YIERAEDMNP VTGQGNVAEN SARAGCKRKA VDAGIGQSSS SVGAFHRGES SSSWVSGPSF YNHNNDLNIS
201: LNHAPRALVP NLSPSPSPAI SSRNFSFGAN PTAQQPVFVR QPVPPSMSAP GHVQPVVDQQ LMDMRYRHPF SNVTPLNPNA SAPSMPPRNM IPPFQWSGNP
301: VAAAGSSAPV DRNALRPGQS RLRSNMLANP LFVPAPPEPR NLAHGHVASA SVQPPASSPT WAPYQNQSPH NQRRLSEHRR RSLISSLLTN QRAAAAAAAR
401: SMVPPPAPDH HGVHPGGDNN FQTLNQAYSR AVPRQGQTAV GVPHSLRGLA STSRGRSRPS ASEIRNVLDH MRRTGNLRVE ELLSLEERIG DVCTGLNEET
501: ISNRLKQRKY NSGTKSTQEV EPCCVCQEEY KEGEEMGVLE CGHDFHSQCI KEWLKRKNLC PICKTTGLNT VEKSSK

Best Arabidopsis Sequence Match ( AT1G45180.4 )
(BLAST)

001: MQGERASLGS LSKALNFERG STSSNAVVDQ QIRWENLHNY GDNDLQDYMS SAADTNPTFA NSVYHEKRGL QRFNIGEASS SGTKNEGASL TEQWKGIGRF
101: EEQRNDKLEL SPLFVQPSNG SRVVRDVNLN AEYNEHLEDM NPVTVHPGHF EVNGLRSEFL LDNSVRAGSS VDGRRASCKR KALDASGGQS SSTGGFREFQ
201: RGVSSSWISG PTYYSPAMTA NDLNISLDHG RRGLVSSAVP NLSPPTITES SSRNYPVWVN PTYQQETVSN FAPSLNSPGL IPADHQQISM RYGHALGNFA
301: SQNPNAPATH MPPVSRNTFQ WNTSPVAAVI SSSSATPVDR NVIHRNATRQ RSNTLEIPLF VPAPELRNVA HGHISRNASG ARHVASSSSR TSVQPSPSSP
401: ALTPYQNNSL HNQRRLSENF RRSLLSSLVT QQRAARSLAH PASPNEHVLQ SGGDNTSQVH NRASSRAGPR QGQDATGISH SLRGLASTSR GRTRMGASEI
501: RNILEHMRRA GNLRLEDVML LNQSIMLGAA DIHDRYRDMR LDVDNMTYEE LLSLEERIGD VCTGLNEETI SNRLKQQKYK SSTRSSQEVE PCCVCQEEYK
601: EEEEIGRLEC GHDFHSQCIK EWLKQKNLCP ICKTTGLNTA NKPQR

Arabidopsis Description

F27F5.26 [Source:UniProtKB/TrEMBL;Acc:Q9MAJ1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.