Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY13429 | Canola | cytosol | 80.0 | 54.26 |
| Bra024007.1-P | Field mustard | nucleus | 78.29 | 29.34 |
| Zm00001d015453_P001 | Maize | cytosol | 19.43 | 26.36 |
| Zm00001d019616_P001 | Maize | cytosol | 18.86 | 25.58 |
| Zm00001d013776_P001 | Maize | cytosol | 18.86 | 25.58 |
| AT4G31450.2 | Thale cress | nucleus | 72.57 | 25.55 |
| HORVU3Hr1G054920.1 | Barley | cytosol | 12.57 | 23.91 |
| GSMUA_AchrUn_... | Banana | nucleus | 29.71 | 23.11 |
| Bra019499.1-P | Field mustard | nucleus | 19.43 | 20.73 |
| TraesCS2B01G456100.1 | Wheat | nucleus | 30.86 | 14.48 |
| TraesCS2A01G437200.1 | Wheat | nucleus | 30.29 | 14.36 |
| TraesCS2D01G432800.1 | Wheat | nucleus | 30.29 | 14.25 |
| HORVU2Hr1G101370.5 | Barley | nucleus | 30.29 | 14.13 |
| OQU80147 | Sorghum | nucleus | 28.57 | 13.97 |
| EES12797 | Sorghum | nucleus | 29.71 | 13.9 |
| Bra022580.1-P | Field mustard | cytosol | 14.29 | 13.89 |
| Zm00001d024406_P002 | Maize | nucleus | 27.43 | 13.41 |
| Bra040450.1-P | Field mustard | nucleus | 18.29 | 13.22 |
| Bra006070.1-P | Field mustard | nucleus | 37.14 | 13.13 |
| Os08t0241400-00 | Rice | nucleus | 28.0 | 13.0 |
| Bra003830.1-P | Field mustard | nucleus, plastid | 25.14 | 12.98 |
| Bra015967.1-P | Field mustard | nucleus | 26.29 | 12.89 |
| Zm00001d026248_P001 | Maize | nucleus | 27.43 | 12.63 |
| Bra009015.1-P | Field mustard | plastid | 38.29 | 12.57 |
| KRH16134 | Soybean | nucleus | 38.86 | 12.25 |
| KRH04957 | Soybean | nucleus | 37.14 | 12.22 |
| Zm00001d002416_P002 | Maize | endoplasmic reticulum, extracellular, vacuole | 26.86 | 11.84 |
| KRH52597 | Soybean | nucleus | 36.57 | 11.83 |
| VIT_04s0008g02390.t01 | Wine grape | nucleus | 37.14 | 11.82 |
| EES04530 | Sorghum | nucleus | 34.86 | 11.78 |
| PGSC0003DMT400075959 | Potato | nucleus | 36.57 | 11.74 |
| Solyc08g006460.2.1 | Tomato | nucleus | 34.86 | 11.49 |
| Bra016574.1-P | Field mustard | nucleus | 23.43 | 11.45 |
| PGSC0003DMT400067670 | Potato | nucleus | 34.29 | 11.36 |
| GSMUA_Achr1P23500_001 | Banana | nucleus | 33.14 | 11.28 |
| Solyc12g096420.1.1 | Tomato | nucleus | 34.86 | 11.07 |
| Bra023101.1-P | Field mustard | nucleus | 33.71 | 11.07 |
| Bra027467.1-P | Field mustard | nucleus | 25.71 | 10.98 |
| Os06t0695600-01 | Rice | nucleus | 36.0 | 10.88 |
| Bra038240.1-P | Field mustard | nucleus | 20.57 | 10.81 |
| Bra022466.1-P | Field mustard | nucleus | 20.0 | 10.8 |
| Zm00001d015289_P001 | Maize | nucleus | 34.86 | 10.78 |
| Bra009800.1-P | Field mustard | nucleus | 25.14 | 10.73 |
| HORVU7Hr1G098540.1 | Barley | nucleus | 34.86 | 10.41 |
| TraesCS7B01G328500.1 | Wheat | nucleus | 33.71 | 10.21 |
| TraesCS7D01G420400.1 | Wheat | nucleus | 33.14 | 10.12 |
| KXG20741 | Sorghum | nucleus | 33.71 | 10.0 |
| Bra039659.1-P | Field mustard | nucleus | 26.29 | 10.0 |
| TraesCS6B01G149700.2 | Wheat | nucleus | 32.0 | 9.93 |
| Zm00001d014609_P002 | Maize | nucleus | 33.14 | 9.91 |
| Bra001582.1-P | Field mustard | nucleus | 24.57 | 9.84 |
| Os02t0150700-01 | Rice | extracellular | 35.43 | 9.67 |
| Bra038109.1-P | Field mustard | nucleus | 26.29 | 9.58 |
| Bra027282.1-P | Field mustard | nucleus | 24.0 | 9.44 |
| TraesCS6A01G121400.2 | Wheat | nucleus | 31.43 | 9.43 |
| TraesCS6D01G111500.2 | Wheat | nucleus | 32.0 | 9.29 |
| KRH61936 | Soybean | nucleus | 29.14 | 9.16 |
| Bra017205.1-P | Field mustard | nucleus | 28.0 | 9.12 |
| Os04t0603200-01 | Rice | nucleus | 17.14 | 9.12 |
| Bra014043.1-P | Field mustard | nucleus | 28.0 | 8.51 |
| Bra033652.1-P | Field mustard | nucleus | 29.71 | 8.46 |
| HORVU6Hr1G022370.10 | Barley | mitochondrion | 32.0 | 8.06 |
| Bra015221.1-P | Field mustard | nucleus | 25.14 | 7.37 |
| Bra039842.1-P | Field mustard | nucleus | 25.14 | 7.37 |
| Bra022579.1-P | Field mustard | cytosol | 5.14 | 6.82 |
| TraesCS7A01G428300.2 | Wheat | nucleus | 20.57 | 6.2 |
| Bra028293.1-P | Field mustard | nucleus | 6.86 | 5.02 |
| Bra028576.1-P | Field mustard | cytosol | 2.29 | 1.41 |
| Bra036336.1-P | Field mustard | nucleus | 3.43 | 1.19 |
Protein Annotations
| EnsemblPlants:Bra024009.1 | EnsemblPlants:Bra024009.1-P | EnsemblPlantsGene:Bra024009 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR22937 | PANTHER:PTHR22937:SF53 | PFAM:PF13639 | PFscan:PS50089 |
| SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI0002540F12 | UniProt:M4E5F5 | MapMan:35.1 | : |
Description
AT5G24870 (E=1e-031) | zinc finger (C3HC4-type RING finger) family protein
Coordinates
chrA03:-:28263587..28265460
Molecular Weight (calculated)
19905.4 Da
IEP (calculated)
5.067
GRAVY (calculated)
-0.604
Length
175 amino acids
Sequence
(BLAST)
(BLAST)
001: MFTMMNQLIP MNPDLHKKEE GEDISSQMHK LHLHDNQTTM TETSNNLNSP VSLELFSGFP DFGSLSSQDS FHNYNLDGIS EELLALEERI GTVRTALTEE
101: AISKSLKTSI YQIKPCDHKE DAKCSICQEE YTIGDEVGRL HCEHTYHLKC VQEWLRMKSW CPICKTSADT SSSSK
101: AISKSLKTSI YQIKPCDHKE DAKCSICQEE YTIGDEVGRL HCEHTYHLKC VQEWLRMKSW CPICKTSADT SSSSK
001: MDRWSSKRAM EARPDSKKKG GVVFRDRFNS NSCKVPICSD EKKSMNFTRF VGSSDKKEKS VLSTYRSSPN GKEVIGTSSK ICISSSSSVK SGEKQPFSQI
101: AIDSSESSRG SEDEVESEIL QVPLGRDKRR MNNKLIYGKV ITPEAECSKL PSSSRIKRGF RQRFGLSKQE FHPGPSGQST SANRGCSPLL SGVIPSGFGL
201: DKRLSRKADT ISKTKVYGES SSSSSARGKN VTEPPPVEVR RRSFNPRGSV SDSRRARHCI LDDDNDVASV GSQRLANRNN SRIRGSGRDG LSSVTAAEMS
301: QTETSNNLNS PVSLELFSGF PEFGLSGSLL SHDSFRSYNL DGISEILPEL DRIEQDIELN YEDLLIMETG LLLGGLSFHD QHRDMRLDID NMSYEELLAL
401: EERIGTVSTA LTEEAISKCL KTSIYQMKPL SYGSITKSPS DNKEDAKCSI CQEEYTIGDE VGRLHCEHTY HVKCVQEWLR IKSWCPICKA TAETSSK
101: AIDSSESSRG SEDEVESEIL QVPLGRDKRR MNNKLIYGKV ITPEAECSKL PSSSRIKRGF RQRFGLSKQE FHPGPSGQST SANRGCSPLL SGVIPSGFGL
201: DKRLSRKADT ISKTKVYGES SSSSSARGKN VTEPPPVEVR RRSFNPRGSV SDSRRARHCI LDDDNDVASV GSQRLANRNN SRIRGSGRDG LSSVTAAEMS
301: QTETSNNLNS PVSLELFSGF PEFGLSGSLL SHDSFRSYNL DGISEILPEL DRIEQDIELN YEDLLIMETG LLLGGLSFHD QHRDMRLDID NMSYEELLAL
401: EERIGTVSTA LTEEAISKCL KTSIYQMKPL SYGSITKSPS DNKEDAKCSI CQEEYTIGDE VGRLHCEHTY HVKCVQEWLR IKSWCPICKA TAETSSK
Arabidopsis Description
At4g31450/F3L17_20 [Source:UniProtKB/TrEMBL;Acc:Q944Q9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.