Factsheet for GSMUA_AchrUn_randomP04570_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	nucleus	21.78	43.75
GSMUA_Achr4P06090_001	Banana	cytosol	26.67	40.82
GSMUA_Achr4P03550_001	Banana	mitochondrion	9.33	35.0
GSMUA_Achr1P23500_001	Banana	nucleus	71.56	31.32
CDX97032	Canola	plastid	45.78	30.75
Bra024009.1-P	Field mustard	nucleus	23.11	29.71
CDY71882	Canola	plastid	45.78	29.43
CDY13429	Canola	cytosol	32.0	27.91
GSMUA_Achr6P03840_001	Banana	nucleus	44.89	27.22
CDX85750	Canola	nucleus	40.0	23.32
CDX95473	Canola	nucleus	45.78	22.2
CDX88140	Canola	nucleus	47.11	21.99
CDY68658	Canola	nucleus	45.33	21.75
GSMUA_Achr10P...	Banana	nucleus	48.44	21.54
CDY40109	Canola	nucleus	17.78	21.51
AT5G24870.2	Thale cress	nucleus	49.33	21.35
VIT_04s0008g02390.t01	Wine grape	nucleus	50.67	20.73
Bra006070.1-P	Field mustard	nucleus	45.33	20.61
CDX78393	Canola	nucleus	44.44	20.24
CDX70363	Canola	nucleus	43.56	20.16
Solyc08g006460.2.1	Tomato	nucleus	47.56	20.15
KRH04957	Soybean	nucleus	47.11	19.92
PGSC0003DMT400067670	Potato	nucleus	46.67	19.89
CDX97044	Canola	nucleus	44.89	19.8
GSMUA_Achr3P05160_001	Banana	nucleus	50.67	19.35
AT5G10650.2	Thale cress	nucleus	44.89	19.24
KRH52597	Soybean	nucleus	46.22	19.22
KRH16134	Soybean	nucleus	46.67	18.92
GSMUA_Achr4P13930_001	Banana	nucleus	20.44	18.55
PGSC0003DMT400075959	Potato	nucleus	44.89	18.53
Bra009015.1-P	Field mustard	plastid	42.67	18.01
CDX69813	Canola	mitochondrion	42.67	18.01
GSMUA_Achr8P31290_001	Banana	nucleus	20.0	17.79
Solyc12g096420.1.1	Tomato	nucleus	42.67	17.42
GSMUA_Achr9P21480_001	Banana	plastid	26.22	17.35
GSMUA_Achr7P15850_001	Banana	nucleus	48.44	16.77
GSMUA_Achr4P11130_001	Banana	nucleus, plastid	24.44	16.47
GSMUA_Achr1P23200_001	Banana	nucleus	25.78	16.11
KRH61936	Soybean	nucleus	38.67	15.62
CDY63645	Canola	nucleus	32.0	15.58
Bra024007.1-P	Field mustard	nucleus	32.0	15.42
AT4G31450.2	Thale cress	nucleus	33.78	15.29
CDY13433	Canola	nucleus	31.56	15.24
GSMUA_Achr3P29390_001	Banana	golgi, plastid	25.33	15.0
GSMUA_Achr4P04290_001	Banana	nucleus	14.67	14.86
GSMUA_Achr9P24150_001	Banana	nucleus	19.56	14.62
GSMUA_Achr4P05140_001	Banana	nucleus	17.78	13.51
GSMUA_Achr4P12850_001	Banana	nucleus	27.11	13.38
GSMUA_Achr3P26700_001	Banana	nucleus	17.33	13.36
GSMUA_Achr11P...	Banana	cytosol, nucleus, peroxisome	30.22	13.28
GSMUA_Achr4P03540_001	Banana	nucleus	11.11	12.69
GSMUA_Achr3P13740_001	Banana	nucleus	27.11	12.45
Bra009800.1-P	Field mustard	nucleus	22.67	12.44
GSMUA_Achr4P04180_001	Banana	mitochondrion, nucleus, peroxisome, plastid	16.0	11.73
GSMUA_Achr5P08460_001	Banana	nucleus	28.89	11.32
GSMUA_Achr4P30500_001	Banana	nucleus	16.89	11.21
GSMUA_Achr9P11290_001	Banana	nucleus	32.0	10.33
GSMUA_Achr9P22530_001	Banana	nucleus	28.0	9.78
GSMUA_Achr8P15680_001	Banana	nucleus	29.78	9.31
GSMUA_Achr4P06080_001	Banana	nucleus	13.33	6.48

Protein Annotations

EnsemblPlants:GSMUA_AchrUn_randomP04570_001	EnsemblPlants:GSMUA_AchrUn_randomT04570_001	EnsemblPlantsGene:GSMUA_AchrUn_randomG04570_001	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR22937	PANTHER:PTHR22937:SF53	PFAM:PF13639	PFscan:PS50089
SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI000294C7E3	UniProt:M0U6B9	MapMan:35.1	:

Description

zinc finger, C3HC4 type domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG04570_001]

Coordinates

chrchrUn_random:+:18277255..18281796

Molecular Weight (calculated)

25464.1 Da

IEP (calculated)

4.886

GRAVY (calculated)

-0.428

Length

225 amino acids

Sequence
(BLAST)

001: MPLTVTQQSQ CESGAIPQSS SRSSADFHHF YQNIHGDPGT SPQIAPRRQI HESAANRLHI FDALLQDRDG YPHLNMEGVA EVLLALERIE QDEGLTHEQL
101: LALGNHLSLD SRSFHDQYRD MRMDIDNMSY EDLLALEEKM GTVSTALTEE ALSRCLKRSP YMSASLISGI SGRDEDEVKC SICQEEFVME DEVGELVCKH
201: TYHAACIRRW LQLKNWCPIC KASLL

Best Arabidopsis Sequence Match ( AT5G24870.3 )
(BLAST)

001: MDGFKGKRTS RPIMPRKASG LVLHENMKKK DDKSVVPICS RIGCSSRVSS TKGDLIDHKA KATVSSFRSP LSGKETVGSS SRSMSGFGGT KKASKVIGRR
101: QLSSLLDMDS SESSSVNEDS PTSERSLPRG KTKESTISVH SESSVSGEVV TEAGSSSRGT GRSIHQRPDL VSRDARVSNS EQNARASVNK NGLRDLRNKS
201: GSDVLPSNST PTRKSNIFRK KTSDGESSSS SRGNKTEGSV VGGKNISSPQ GNGITMSEPR RNRNLPSVRD NSVVSSSTRR STGYYGRTGR AGAVATLQAP
301: RPPTRADLNP SRSAEASRSP LNSYSRPISS NGRLRSLMMP GSPSEAGLSR SLMNRDTFRR YNMNGVAEVL LALERIEQDE ELTYEQLAVL ETNLFLNGMS
401: SFHDQHRDMR LDIDNMSYEE LLALEEKMGT VSTALSEEAL LKSLKSSIYR PNDESDDICL NKDDDVKCSI CQEEYVDGDE VGTLPCQHKY HVSCAQQWLR
501: MKNWCPICKT SAESQPHPFS

Arabidopsis Description

At5g24870 [Source:UniProtKB/TrEMBL;Acc:Q8L775]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.