Factsheet for GSMUA_Achr4P04180_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, peroxisome, mitochondrion

Predictor Summary:

nucleus 3
mitochondrion 3
plastid 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P05140_001	Banana	nucleus	65.47	67.91
GSMUA_Achr3P26700_001	Banana	nucleus	63.52	66.78
GSMUA_Achr4P04290_001	Banana	nucleus	35.5	49.1
GSMUA_Achr9P24150_001	Banana	nucleus	47.88	48.84
EER97094	Sorghum	nucleus	51.14	48.46
OQU80744	Sorghum	mitochondrion	22.48	47.92
TraesCS7A01G271500.1	Wheat	cytosol, mitochondrion, nucleus	44.95	47.92
Os09t0535100-01	Rice	nucleus	48.21	45.54
GSMUA_Achr4P03550_001	Banana	mitochondrion	8.79	45.0
TraesCS5D01G286700.1	Wheat	nucleus	17.26	44.92
Zm00001d021314_P005	Maize	cytosol, mitochondrion, nucleus	46.91	44.72
Zm00001d006226_P001	Maize	peroxisome	46.25	44.65
EES15239	Sorghum	nucleus	45.28	44.27
TraesCS7D01G271800.4	Wheat	cytosol, mitochondrion, nucleus	43.0	44.0
Os08t0548300-01	Rice	nucleus	43.65	43.93
TraesCS5D01G331600.1	Wheat	cytosol, mitochondrion, nucleus	47.88	43.24
TraesCS5B01G279200.1	Wheat	cytosol	16.94	42.62
VIT_10s0042g00580.t01	Wine grape	nucleus	42.67	42.53
Zm00001d053212_P002	Maize	cytosol, mitochondrion, nucleus, plastid	39.74	42.51
TraesCS7B01G170500.1	Wheat	cytosol, mitochondrion, nucleus	41.37	42.47
HORVU7Hr1G057310.5	Barley	cytosol, nucleus, plastid	41.04	42.14
HORVU5Hr1G082790.2	Barley	nucleus	46.91	41.62
CDY25357	Canola	nucleus	40.07	38.44
TraesCS5B01G325800.1	Wheat	mitochondrion	47.23	38.36
CDY24595	Canola	nucleus	39.09	38.1
Bra022466.1-P	Field mustard	nucleus	39.74	37.65
TraesCS5A01G325400.2	Wheat	nucleus	45.28	37.57
KRG90628	Soybean	nucleus	40.72	37.31
CDY33429	Canola	nucleus	39.41	36.67
AT3G19910.1	Thale cress	nucleus	40.39	36.47
Bra038240.1-P	Field mustard	nucleus	39.09	36.04
CDY42218	Canola	nucleus	39.09	35.93
KRH36126	Soybean	cytosol, mitochondrion, nucleus	40.39	34.93
GSMUA_AchrUn_...	Banana	nucleus	11.07	30.36
GSMUA_Achr4P13930_001	Banana	nucleus	23.13	28.63
GSMUA_Achr8P31290_001	Banana	nucleus	21.5	26.09
GSMUA_Achr4P06090_001	Banana	cytosol	12.05	25.17
GSMUA_Achr4P03540_001	Banana	nucleus	13.68	21.32
GSMUA_Achr4P30500_001	Banana	nucleus	20.2	18.29
GSMUA_AchrUn_...	Banana	nucleus	11.73	16.0
GSMUA_Achr9P21480_001	Banana	plastid	12.38	11.18
GSMUA_Achr6P03840_001	Banana	nucleus	13.36	11.05
GSMUA_Achr3P13740_001	Banana	nucleus	17.59	11.02
GSMUA_Achr4P11130_001	Banana	nucleus, plastid	11.73	10.78
GSMUA_Achr3P29390_001	Banana	golgi, plastid	12.7	10.26
GSMUA_Achr4P12850_001	Banana	nucleus	14.66	9.87
GSMUA_Achr11P...	Banana	cytosol, nucleus, peroxisome	16.29	9.77
GSMUA_Achr1P23200_001	Banana	nucleus	11.4	9.72
GSMUA_Achr10P...	Banana	nucleus	14.66	8.89
GSMUA_Achr1P23500_001	Banana	nucleus	14.33	8.56
GSMUA_Achr5P08460_001	Banana	nucleus	15.31	8.19
GSMUA_Achr9P22530_001	Banana	nucleus	16.29	7.76
GSMUA_Achr9P11290_001	Banana	nucleus	17.26	7.6
GSMUA_Achr3P05160_001	Banana	nucleus	14.33	7.47
GSMUA_Achr8P15680_001	Banana	nucleus	15.96	6.81
GSMUA_Achr7P15850_001	Banana	nucleus	14.33	6.77
GSMUA_Achr4P06080_001	Banana	nucleus	9.77	6.48

Protein Annotations

EnsemblPlants:GSMUA_Achr4P04180_001	EnsemblPlants:GSMUA_Achr4T04180_001	EnsemblPlantsGene:GSMUA_Achr4G04180_001	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR14155	PANTHER:PTHR14155:SF166	PFAM:PF13639	PFscan:PS50089
SEG:seg	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI000296019E	UniProt:M0SKY5	MapMan:35.1

Description

Putative E3 ubiquitin ligase BIG BROTHER-related [Source:GMGC_GENE;Acc:GSMUA_Achr4G04180_001]

Coordinates

chr4:+:3330806..3336478

Molecular Weight (calculated)

33447.9 Da

IEP (calculated)

3.822

GRAVY (calculated)

-0.541

Length

307 amino acids

Sequence
(BLAST)

001: MTSTAAEPRL TTRLLFSLSP LSLRFFGGVI MAGGKHDTDE GNPNPIPTPP PLAGDAPLSG EATSPPLPPP SARRPFTSLS QVDADLALAR ALQEQAPHHW
101: TSSSSSSCSS MLESDYESSD ADSYDYEEEE VEEGVGDEPD HVIEEDAGNI EGSDYDHDAF DANDPDVDDE AFTMALQDSE EQEVAVRLMA LAGLNEWVSD
201: DHDDYGNNSQ DAWQEELIAL GEVVGTENRG LSVDKISALP LVSYTANNVQ DSNAEQCVIC RLEYEDGDSL MLLSCKHRYH FECINKWLQI NKVCPACNAE
301: VSTSENK

Best Arabidopsis Sequence Match ( AT3G19910.1 )
(BLAST)

001: MPMENDNGPH VGNVVVTAEQ ATKINETDGR LPENRQTGVV SDTGSGSERG EQGVGESAVA VAVPVEESGS ISVGELPAPR SSSARVPFTN LSQIDADLAL
101: ARTLQEQERA YMMLTMNSEI SDYGSWETGS YVYDEDEFDD PENEDEDDDE DEYETDDDPQ EDGLDVNVHA NEDDQEDDGN SDIEEVAYTD DEAYARALQE
201: AEERDMAARL SALSGLANRV VEDLEDESHT SQDAWDEMDP DELSYEELLA LGDIVGTESR GLSADTIASL PSKRYKEGDN QNGTNESCVI CRLDYEDDED
301: LILLPCKHSY HSECINNWLK INKVCPVCSA EVSTSTSGQS

Arabidopsis Description

BBRE3 ubiquitin ligase BIG BROTHER-related [Source:UniProtKB/Swiss-Prot;Acc:Q9LT17]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.