Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS7A01G271500.1 | Wheat | cytosol, mitochondrion, nucleus | 67.87 | 71.88 |
OQU80744 | Sorghum | mitochondrion | 33.44 | 70.83 |
EES15239 | Sorghum | nucleus | 69.51 | 67.52 |
TraesCS7D01G271800.4 | Wheat | cytosol, mitochondrion, nucleus | 65.57 | 66.67 |
HORVU7Hr1G057310.5 | Barley | cytosol, nucleus, plastid | 65.25 | 66.56 |
TraesCS7B01G170500.1 | Wheat | cytosol, mitochondrion, nucleus | 65.25 | 66.56 |
Zm00001d053212_P002 | Maize | cytosol, mitochondrion, nucleus, plastid | 62.62 | 66.55 |
Os09t0535100-01 | Rice | nucleus | 61.31 | 57.54 |
GSMUA_Achr4P05140_001 | Banana | nucleus | 52.79 | 54.39 |
GSMUA_Achr3P26700_001 | Banana | nucleus | 49.51 | 51.71 |
VIT_10s0042g00580.t01 | Wine grape | nucleus | 46.23 | 45.78 |
GSMUA_Achr4P04180_001 | Banana | mitochondrion, nucleus, peroxisome, plastid | 43.93 | 43.65 |
GSMUA_Achr9P24150_001 | Banana | nucleus | 42.62 | 43.19 |
GSMUA_Achr4P04290_001 | Banana | nucleus | 31.15 | 42.79 |
KRG90628 | Soybean | nucleus | 46.89 | 42.69 |
CDY25357 | Canola | nucleus | 44.59 | 42.5 |
CDY24595 | Canola | nucleus | 43.28 | 41.9 |
Bra022466.1-P | Field mustard | nucleus | 44.26 | 41.67 |
CDY42218 | Canola | nucleus | 45.25 | 41.32 |
Bra038240.1-P | Field mustard | nucleus | 44.92 | 41.14 |
CDY33429 | Canola | nucleus | 44.26 | 40.91 |
AT3G19910.1 | Thale cress | nucleus | 44.92 | 40.29 |
KRH36126 | Soybean | cytosol, mitochondrion, nucleus | 46.23 | 39.72 |
Os03t0173900-01 | Rice | nucleus | 24.59 | 30.0 |
Os04t0571200-01 | Rice | nucleus | 24.26 | 29.13 |
Os06t0125800-01 | Rice | nucleus | 19.02 | 22.22 |
Os05t0550000-00 | Rice | nucleus | 16.39 | 13.74 |
Os08t0241400-00 | Rice | nucleus | 16.07 | 13.0 |
Os05t0564300-01 | Rice | nucleus | 16.72 | 10.2 |
Os04t0603200-01 | Rice | nucleus | 10.49 | 9.73 |
Os01t0159300-01 | Rice | nucleus | 15.74 | 9.58 |
Os05t0163400-03 | Rice | nucleus | 16.07 | 9.19 |
Os06t0695600-01 | Rice | nucleus | 16.39 | 8.64 |
Os01t0667700-02 | Rice | nucleus | 14.75 | 8.59 |
Os02t0150700-01 | Rice | extracellular | 18.03 | 8.58 |
Os04t0648800-01 | Rice | nucleus | 17.38 | 7.95 |
Os04t0185500-01 | Rice | nucleus | 17.7 | 7.62 |
Protein Annotations
Gene3D:3.30.40.10 | MapMan:35.1 | EntrezGene:4346240 | EMBL:AK073266 | ProteinID:BAD09949.1 | ProteinID:BAD10755.1 |
ProteinID:BAF24348.1 | ProteinID:BAT06564.1 | ProteinID:EAZ43565.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006464 |
GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 |
GO:GO:0019538 | GO:GO:0043161 | GO:GO:0061630 | InterPro:IPR001841 | InterPro:IPR013083 | EnsemblPlantsGene:Os08g0548300 |
EnsemblPlants:Os08t0548300-01 | PFAM:PF13639 | PFscan:PS50089 | PANTHER:PTHR14155 | PANTHER:PTHR14155:SF166 | UniProt:Q6YT05 |
SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI000023AF8D | RefSeq:XP_015650586.1 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD |
SEG:seg | : | : | : | : | : |
Description
Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os08t0548300-01)
Coordinates
chr8:+:27502328..27504972
Molecular Weight (calculated)
32966.0 Da
IEP (calculated)
3.484
GRAVY (calculated)
-0.873
Length
305 amino acids
Sequence
(BLAST)
(BLAST)
001: MDAAKDTTAA AADQNPTPNP PTAAAPPDDS AAAAAAGRRP FTSLTQEEAD LALARVLQEQ ERAYMMLSAH HGGDYAASDG GSYEFDEEGE GSDFEDEDGD
101: GDGDGEALDE DEEVADADAD AAGDPAELDP ARYEDDEAFA RALQDAEERE VAGRLMALAG LSDWRVMDHD DDDVDDDDDE DDDDDDDDED EDGDDPQDAW
201: EDVDPDEYSY EELVALGEVV GTESRGLSAD TLASLPSITY RAQDKQDGNM EQCVICRVEF EEGESLVALP CKHSYHSECI NQWLQLNKVC PMCSAEVPTS
301: QDTRA
101: GDGDGEALDE DEEVADADAD AAGDPAELDP ARYEDDEAFA RALQDAEERE VAGRLMALAG LSDWRVMDHD DDDVDDDDDE DDDDDDDDED EDGDDPQDAW
201: EDVDPDEYSY EELVALGEVV GTESRGLSAD TLASLPSITY RAQDKQDGNM EQCVICRVEF EEGESLVALP CKHSYHSECI NQWLQLNKVC PMCSAEVPTS
301: QDTRA
001: MPMENDNGPH VGNVVVTAEQ ATKINETDGR LPENRQTGVV SDTGSGSERG EQGVGESAVA VAVPVEESGS ISVGELPAPR SSSARVPFTN LSQIDADLAL
101: ARTLQEQERA YMMLTMNSEI SDYGSWETGS YVYDEDEFDD PENEDEDDDE DEYETDDDPQ EDGLDVNVHA NEDDQEDDGN SDIEEVAYTD DEAYARALQE
201: AEERDMAARL SALSGLANRV VEDLEDESHT SQDAWDEMDP DELSYEELLA LGDIVGTESR GLSADTIASL PSKRYKEGDN QNGTNESCVI CRLDYEDDED
301: LILLPCKHSY HSECINNWLK INKVCPVCSA EVSTSTSGQS
101: ARTLQEQERA YMMLTMNSEI SDYGSWETGS YVYDEDEFDD PENEDEDDDE DEYETDDDPQ EDGLDVNVHA NEDDQEDDGN SDIEEVAYTD DEAYARALQE
201: AEERDMAARL SALSGLANRV VEDLEDESHT SQDAWDEMDP DELSYEELLA LGDIVGTESR GLSADTIASL PSKRYKEGDN QNGTNESCVI CRLDYEDDED
301: LILLPCKHSY HSECINNWLK INKVCPVCSA EVSTSTSGQS
Arabidopsis Description
BBRE3 ubiquitin ligase BIG BROTHER-related [Source:UniProtKB/Swiss-Prot;Acc:Q9LT17]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.