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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • mitochondrion 2
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS7A01G271500.1 Wheat cytosol, mitochondrion, nucleus 67.87 71.88
OQU80744 Sorghum mitochondrion 33.44 70.83
EES15239 Sorghum nucleus 69.51 67.52
TraesCS7D01G271800.4 Wheat cytosol, mitochondrion, nucleus 65.57 66.67
HORVU7Hr1G057310.5 Barley cytosol, nucleus, plastid 65.25 66.56
TraesCS7B01G170500.1 Wheat cytosol, mitochondrion, nucleus 65.25 66.56
Zm00001d053212_P002 Maize cytosol, mitochondrion, nucleus, plastid 62.62 66.55
Os09t0535100-01 Rice nucleus 61.31 57.54
GSMUA_Achr4P05140_001 Banana nucleus 52.79 54.39
GSMUA_Achr3P26700_001 Banana nucleus 49.51 51.71
VIT_10s0042g00580.t01 Wine grape nucleus 46.23 45.78
GSMUA_Achr4P04180_001 Banana mitochondrion, nucleus, peroxisome, plastid 43.93 43.65
GSMUA_Achr9P24150_001 Banana nucleus 42.62 43.19
GSMUA_Achr4P04290_001 Banana nucleus 31.15 42.79
KRG90628 Soybean nucleus 46.89 42.69
CDY25357 Canola nucleus 44.59 42.5
CDY24595 Canola nucleus 43.28 41.9
Bra022466.1-P Field mustard nucleus 44.26 41.67
CDY42218 Canola nucleus 45.25 41.32
Bra038240.1-P Field mustard nucleus 44.92 41.14
CDY33429 Canola nucleus 44.26 40.91
AT3G19910.1 Thale cress nucleus 44.92 40.29
KRH36126 Soybean cytosol, mitochondrion, nucleus 46.23 39.72
Os03t0173900-01 Rice nucleus 24.59 30.0
Os04t0571200-01 Rice nucleus 24.26 29.13
Os06t0125800-01 Rice nucleus 19.02 22.22
Os05t0550000-00 Rice nucleus 16.39 13.74
Os08t0241400-00 Rice nucleus 16.07 13.0
Os05t0564300-01 Rice nucleus 16.72 10.2
Os04t0603200-01 Rice nucleus 10.49 9.73
Os01t0159300-01 Rice nucleus 15.74 9.58
Os05t0163400-03 Rice nucleus 16.07 9.19
Os06t0695600-01 Rice nucleus 16.39 8.64
Os01t0667700-02 Rice nucleus 14.75 8.59
Os02t0150700-01 Rice extracellular 18.03 8.58
Os04t0648800-01 Rice nucleus 17.38 7.95
Os04t0185500-01 Rice nucleus 17.7 7.62
Protein Annotations
Gene3D:3.30.40.10MapMan:35.1EntrezGene:4346240EMBL:AK073266ProteinID:BAD09949.1ProteinID:BAD10755.1
ProteinID:BAF24348.1ProteinID:BAT06564.1ProteinID:EAZ43565.1GO:GO:0003674GO:GO:0003824GO:GO:0006464
GO:GO:0008150GO:GO:0008152GO:GO:0009056GO:GO:0009987GO:GO:0016567GO:GO:0016740
GO:GO:0019538GO:GO:0043161GO:GO:0061630InterPro:IPR001841InterPro:IPR013083EnsemblPlantsGene:Os08g0548300
EnsemblPlants:Os08t0548300-01PFAM:PF13639PFscan:PS50089PANTHER:PTHR14155PANTHER:PTHR14155:SF166UniProt:Q6YT05
SMART:SM00184SUPFAM:SSF57850UniParc:UPI000023AF8DRefSeq:XP_015650586.1InterPro:Znf_RINGInterPro:Znf_RING/FYVE/PHD
SEG:seg:::::
Description
Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os08t0548300-01)
Coordinates
chr8:+:27502328..27504972
Molecular Weight (calculated)
32966.0 Da
IEP (calculated)
3.484
GRAVY (calculated)
-0.873
Length
305 amino acids
Sequence
(BLAST)
001: MDAAKDTTAA AADQNPTPNP PTAAAPPDDS AAAAAAGRRP FTSLTQEEAD LALARVLQEQ ERAYMMLSAH HGGDYAASDG GSYEFDEEGE GSDFEDEDGD
101: GDGDGEALDE DEEVADADAD AAGDPAELDP ARYEDDEAFA RALQDAEERE VAGRLMALAG LSDWRVMDHD DDDVDDDDDE DDDDDDDDED EDGDDPQDAW
201: EDVDPDEYSY EELVALGEVV GTESRGLSAD TLASLPSITY RAQDKQDGNM EQCVICRVEF EEGESLVALP CKHSYHSECI NQWLQLNKVC PMCSAEVPTS
301: QDTRA
Best Arabidopsis Sequence Match ( AT3G19910.1 )
(BLAST)
001: MPMENDNGPH VGNVVVTAEQ ATKINETDGR LPENRQTGVV SDTGSGSERG EQGVGESAVA VAVPVEESGS ISVGELPAPR SSSARVPFTN LSQIDADLAL
101: ARTLQEQERA YMMLTMNSEI SDYGSWETGS YVYDEDEFDD PENEDEDDDE DEYETDDDPQ EDGLDVNVHA NEDDQEDDGN SDIEEVAYTD DEAYARALQE
201: AEERDMAARL SALSGLANRV VEDLEDESHT SQDAWDEMDP DELSYEELLA LGDIVGTESR GLSADTIASL PSKRYKEGDN QNGTNESCVI CRLDYEDDED
301: LILLPCKHSY HSECINNWLK INKVCPVCSA EVSTSTSGQS
Arabidopsis Description
BBRE3 ubiquitin ligase BIG BROTHER-related [Source:UniProtKB/Swiss-Prot;Acc:Q9LT17]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.