CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
mitochondrion 6
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d053212_P002	Maize	cytosol, mitochondrion, nucleus, plastid	78.47	39.37
EES15239	Sorghum	nucleus	79.86	36.62
TraesCS7A01G271500.1	Wheat	cytosol, mitochondrion, nucleus	68.75	34.38
Os08t0548300-01	Rice	nucleus	70.83	33.44
TraesCS7B01G170500.1	Wheat	cytosol, mitochondrion, nucleus	62.5	30.1
HORVU7Hr1G057310.5	Barley	cytosol, nucleus, plastid	62.5	30.1
TraesCS7D01G271800.4	Wheat	cytosol, mitochondrion, nucleus	61.81	29.67
EER97094	Sorghum	nucleus	66.67	29.63
GSMUA_Achr4P05140_001	Banana	nucleus	59.03	28.72
GSMUA_Achr3P26700_001	Banana	nucleus	55.56	27.4
GSMUA_Achr4P04290_001	Banana	nucleus	40.97	26.58
GSMUA_Achr9P24150_001	Banana	nucleus	53.47	25.58
VIT_10s0042g00580.t01	Wine grape	nucleus	54.17	25.32
EER99218	Sorghum	nucleus	29.86	24.57
GSMUA_Achr4P04180_001	Banana	mitochondrion, nucleus, peroxisome, plastid	47.92	22.48
CDY24595	Canola	nucleus	48.61	22.22
CDY25357	Canola	nucleus	49.31	22.19
KRG90628	Soybean	nucleus	51.39	22.09
Bra022466.1-P	Field mustard	nucleus	49.31	21.91
KXG40075	Sorghum	cytosol	37.5	21.69
CDY33429	Canola	nucleus	48.61	21.21
AT3G19910.1	Thale cress	nucleus	50.0	21.18
Bra038240.1-P	Field mustard	nucleus	48.61	21.02
CDY42218	Canola	nucleus	48.61	20.96
EES11283	Sorghum	nucleus	35.42	20.65
KRH36126	Soybean	cytosol, mitochondrion, nucleus	49.31	20.0
KXG19166	Sorghum	nucleus	25.69	13.6
OQU87370	Sorghum	nucleus	27.78	11.46
EES18624	Sorghum	cytosol, mitochondrion, nucleus, plastid	28.47	10.9
OQU80147	Sorghum	nucleus	26.39	10.61
EES12797	Sorghum	nucleus	25.69	9.89
EES04530	Sorghum	nucleus	28.47	7.92
KXG22536	Sorghum	nucleus	27.78	7.87
EES00281	Sorghum	nucleus	27.78	7.77
EES19093	Sorghum	nucleus	28.47	7.62
EES03404	Sorghum	nucleus	26.39	7.29
KXG20741	Sorghum	nucleus	26.39	6.44
EES11547	Sorghum	nucleus	29.17	6.36
EES10483	Sorghum	nucleus	25.69	5.32

Protein Annotations

EnsemblPlants:OQU80744	EnsemblPlantsGene:SORBI_3007G177801	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR14155	PANTHER:PTHR14155:SF166	PFAM:PF13639	PFscan:PS50089	ProteinID:OQU80744
ProteinID:OQU80744.1	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI000B8BB1FA	UniProt:A0A1Z5RAE4	MapMan:35.1

Description

hypothetical protein

Coordinates

chr7:-:61134560..61136340

Molecular Weight (calculated)

15953.9 Da

IEP (calculated)

4.535

GRAVY (calculated)

-0.401

Length

144 amino acids

Sequence
(BLAST)

001: MLRSARTTRP SRAPCRMPRS ATSPTDPWRL LESVIDGWED VDPDEYSYEE LIALGEVVGM ESKGLAADTT IASLPSVTYQ AQDKQDGNME QCVICRVEFD
101: EGGSLVALPC KHPYHSECIN QWLQLKKVCP MCSAEVSTSV NKQA

Best Arabidopsis Sequence Match ( AT3G19910.1 )
(BLAST)

001: MPMENDNGPH VGNVVVTAEQ ATKINETDGR LPENRQTGVV SDTGSGSERG EQGVGESAVA VAVPVEESGS ISVGELPAPR SSSARVPFTN LSQIDADLAL
101: ARTLQEQERA YMMLTMNSEI SDYGSWETGS YVYDEDEFDD PENEDEDDDE DEYETDDDPQ EDGLDVNVHA NEDDQEDDGN SDIEEVAYTD DEAYARALQE
201: AEERDMAARL SALSGLANRV VEDLEDESHT SQDAWDEMDP DELSYEELLA LGDIVGTESR GLSADTIASL PSKRYKEGDN QNGTNESCVI CRLDYEDDED
301: LILLPCKHSY HSECINNWLK INKVCPVCSA EVSTSTSGQS

Arabidopsis Description

BBRE3 ubiquitin ligase BIG BROTHER-related [Source:UniProtKB/Swiss-Prot;Acc:Q9LT17]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.