CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d008649_P003	Maize	cytosol	86.41	84.44
Zm00001d039769_P002	Maize	cytosol	86.6	80.94
Os01t0159300-01	Rice	nucleus	54.95	56.49
TraesCS3D01G105300.1	Wheat	cytosol	55.92	55.6
TraesCS3B01G120600.2	Wheat	cytosol	55.15	54.83
TraesCS3A01G103000.1	Wheat	nucleus	54.56	54.14
GSMUA_AchrUn_...	Banana	nucleus	10.87	50.0
HORVU3Hr1G018800.2	Barley	cytosol, plastid	55.92	48.9
EES19093	Sorghum	nucleus	42.33	40.52
VIT_16s0022g00290.t01	Wine grape	nucleus	5.83	39.47
OQU80744	Sorghum	mitochondrion	7.77	27.78
EER99218	Sorghum	nucleus	8.35	24.57
VIT_08s0040g02160.t01	Wine grape	nucleus	23.88	22.53
KRH32434	Soybean	nucleus	22.52	21.52
EES12797	Sorghum	nucleus	15.34	21.12
KRH19845	Soybean	nucleus	22.52	21.09
OQU80147	Sorghum	nucleus	14.56	20.95
PGSC0003DMT400004449	Potato	nucleus	21.94	20.85
KRG95955	Soybean	nucleus	22.14	20.77
Solyc09g007530.2.1	Tomato	nucleus	21.75	20.66
KRH67668	Soybean	nucleus	21.75	20.33
CDX79718	Canola	nucleus	20.39	19.77
CDY55435	Canola	nucleus	20.0	19.51
OQU87370	Sorghum	nucleus	13.01	19.2
CDY68424	Canola	nucleus	20.0	19.18
Bra023101.1-P	Field mustard	nucleus	19.81	19.14
CDY46757	Canola	nucleus	19.61	18.95
VIT_13s0019g04100.t01	Wine grape	extracellular	20.78	18.94
Bra017205.1-P	Field mustard	nucleus	19.61	18.81
GSMUA_Achr11P...	Banana	cytosol, nucleus, peroxisome	18.25	18.36
EES11283	Sorghum	nucleus	8.74	18.22
GSMUA_Achr5P08460_001	Banana	nucleus	19.61	17.6
AT2G37150.3	Thale cress	endoplasmic reticulum, extracellular	19.81	17.03
KXG19166	Sorghum	nucleus	8.93	16.91
EES03404	Sorghum	nucleus	17.09	16.89
KXG40075	Sorghum	cytosol	8.16	16.87
EES18624	Sorghum	cytosol, mitochondrion, nucleus, plastid	12.04	16.49
EES04530	Sorghum	nucleus	16.31	16.22
KXG22536	Sorghum	nucleus	15.34	15.55
EES15239	Sorghum	nucleus	9.32	15.29
EER97094	Sorghum	nucleus	9.51	15.12
EES10483	Sorghum	nucleus	20.39	15.09
EES11547	Sorghum	nucleus	18.84	14.7
KXG20741	Sorghum	nucleus	15.34	13.39
Bra028576.1-P	Field mustard	cytosol	6.21	11.31
Bra036336.1-P	Field mustard	nucleus	8.93	9.15
CDY47948	Canola	nucleus	8.93	9.15

Protein Annotations

EnsemblPlants:EES00281	EnsemblPlantsGene:SORBI_3003G061900	EntrezGene:8075121	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR22937	PANTHER:PTHR22937:SF53	PFAM:PF13639	PFscan:PS50089
ProteinID:EES00281	ProteinID:EES00281.1	ProteinID:OQU86272.1	RefSeq:XP_002455161.1	SEG:seg	SMART:SM00184
SUPFAM:SSF57850	unigene:Sbi.1834	UniParc:UPI0001A84698	UniProt:C5XP77	MapMan:35.1	:

Description

hypothetical protein

Coordinates

chr3:+:5413738..5418846

Molecular Weight (calculated)

55436.0 Da

IEP (calculated)

8.037

GRAVY (calculated)

-0.487

Length

515 amino acids

Sequence
(BLAST)

001: MARNNQGHLQ LPEMDHIQPK NIPHNESLPL GQKLLLHHGS DAPLRIGHST HGNMGHRIND LPSSSRTVQT LGYRVGNPGT SHAPFVHYHA GSSSSHLPAE
101: PAVDYLHRSE EGFAPVGSHI DNRRAAMKRK DPSVHPAGIS ATGYYVGSCS NTQPSNFVQP NPAPLAEPLL HQIPLSIDQS GWDGQHLIHQ EGFQRNVRAR
201: HSHNISLEPR SASTYPLNSA HMSSFGSTAS ASSSTSVERN QAPVSLPTRT VPSGAPGITS RALTGRAYYP VVGSSSPSVG AVPTIHGSSG TAIFANGGYA
301: PSTAHTGTVP IYPNGAPATS SGSRAMPHQM VIQNHPHATS AATSTSMRDR IAAASRHARH VSVGHANNGR YRRARSSYYS LHPLMVEAER FMMDQLVFYE
401: SRAAAADPHR DMRLDIDNMS YEDLLALGES MGNVSTGLAD EKISKCVKEV VCCSSGQMQI DEDDQDDGSC IICLEGYKDK DMLGILKCRH DFHADCIKKW
501: LQTKNSCPVC KAAAA

Best Arabidopsis Sequence Match ( AT2G15530.5 )
(BLAST)

001: MNPMQGPRSI GGSSTEVNQV DGESIYCTET SLNTMLNPAD TGFPNNSTPS GRPTYASSSS HAAQDHTWWR FGESSSIPGP SDQVNSIGIK TSHQLPQDGT
101: HHFVGYGSEG RQTGLNGMMV DGGVHAGSHI RNVPSFLRGS SSNPMPQHVD MSMDMDSDNC NAQTSGVVIR HNSYGSSLGS SVQAAGESSS GPASPFGGWG
201: SSCKRKALEG SPSHYFSGET PNRIVQTENS ASHASLSQYG ASSSLSLATP SQSSPNVTNH FGRTEQMFGS GGGRAVAASA FHSTRNTDTL SRAGRRLNPR
301: QPQESVAFSV SHGGTSVRPT GSLQQNLPLN SPFVDPPDVR SSSITSGSNT GENQTNIVHL PALTRNIHQY AWDASFSSRA SNPSGIGMPA ERLGPQWETP
401: RSNQEQPLFA PATDMRQPVH DLWNFARGSP GSSVDSLFVP RAGPSSAIHT PQPNPTWIPP QNAPPHNPSR TSELSPWSLF PSIESPSASH GGPLPLLPAG
501: PSVSSNEVTM PSSSNSRSHR SRHRRSGLLL ERQNELLHLR HIGRSLAADG NGRNQIISEI RQVLHAMRRG ENLRVEDYMV FDPLIYQGMT DMHDRHREMR
601: LDVDNMSYEE LLALGERIGD VSTGLSEEVI LKAMKQHKHT SSSPSSVELH QNIEPCCICQ EEYVEGDNLG TLKCGHEFHK DCIKQWVMIK NLCPICKTEA
701: LKTP

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IIG9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.