Factsheet for GSMUA_Achr5P08460_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	nucleus	12.2	62.5
VIT_16s0022g00290.t01	Wine grape	nucleus	6.1	46.05
GSMUA_Achr4P06090_001	Banana	cytosol	10.1	39.46
GSMUA_Achr4P03550_001	Banana	mitochondrion	3.83	36.67
VIT_08s0040g02160.t01	Wine grape	nucleus	33.8	35.53
KRH19845	Soybean	nucleus	33.97	35.45
KRH32434	Soybean	nucleus	33.28	35.44
KRH67668	Soybean	nucleus	32.4	33.76
KRG95955	Soybean	nucleus	31.71	33.15
PGSC0003DMT400004449	Potato	nucleus	30.84	32.66
Solyc09g007530.2.1	Tomato	nucleus	30.49	32.29
VIT_13s0019g04100.t01	Wine grape	extracellular	31.01	31.5
CDX79718	Canola	nucleus	26.83	29.0
Bra023101.1-P	Field mustard	nucleus	26.83	28.89
GSMUA_AchrUn_...	Banana	nucleus	11.32	28.89
CDY46757	Canola	nucleus	26.48	28.52
CDY55435	Canola	nucleus	25.78	28.03
CDY68424	Canola	nucleus	26.13	27.93
AT2G37150.3	Thale cress	endoplasmic reticulum, extracellular	28.4	27.21
Bra017205.1-P	Field mustard	nucleus	25.44	27.19
GSMUA_Achr4P13930_001	Banana	nucleus	9.93	22.98
GSMUA_Achr3P13740_001	Banana	nucleus	19.34	22.65
Os01t0159300-01	Rice	nucleus	19.51	22.36
GSMUA_Achr11P...	Banana	cytosol, nucleus, peroxisome	19.86	22.27
GSMUA_Achr8P31290_001	Banana	nucleus	8.89	20.16
TraesCS1D01G111500.1	Wheat	nucleus	18.82	20.15
TraesCS1B01G129600.1	Wheat	nucleus	18.47	19.85
TraesCS1A01G107600.1	Wheat	nucleus	18.47	19.74
Os05t0163400-03	Rice	nucleus	18.29	19.7
EES00281	Sorghum	nucleus	17.6	19.61
HORVU1Hr1G024190.2	Barley	nucleus	18.29	19.55
GSMUA_Achr9P21480_001	Banana	plastid	11.5	19.41
GSMUA_Achr4P04290_001	Banana	nucleus	7.49	19.37
Zm00001d008649_P003	Maize	cytosol	17.77	19.35
GSMUA_Achr4P11130_001	Banana	nucleus, plastid	11.15	19.16
Zm00001d039769_P002	Maize	cytosol	18.12	18.87
GSMUA_Achr4P03540_001	Banana	nucleus	6.45	18.78
EES19093	Sorghum	nucleus	17.6	18.77
GSMUA_Achr4P05140_001	Banana	nucleus	9.58	18.58
GSMUA_Achr3P26700_001	Banana	nucleus	9.41	18.49
GSMUA_Achr6P03840_001	Banana	nucleus	11.85	18.33
TraesCS3B01G120600.2	Wheat	cytosol	16.38	18.15
GSMUA_Achr1P23200_001	Banana	nucleus	11.32	18.06
TraesCS3D01G105300.1	Wheat	cytosol	16.2	17.95
TraesCS3A01G103000.1	Wheat	nucleus	16.2	17.92
GSMUA_Achr9P24150_001	Banana	nucleus	8.89	16.94
GSMUA_Achr4P30500_001	Banana	nucleus	9.93	16.81
GSMUA_Achr10P...	Banana	nucleus	14.81	16.8
HORVU3Hr1G018800.2	Barley	cytosol, plastid	16.72	16.3
GSMUA_Achr3P29390_001	Banana	golgi, plastid	10.63	16.05
GSMUA_Achr4P12850_001	Banana	nucleus	12.72	16.01
GSMUA_Achr4P04180_001	Banana	mitochondrion, nucleus, peroxisome, plastid	8.19	15.31
GSMUA_Achr9P11290_001	Banana	nucleus	18.29	15.06
GSMUA_Achr3P05160_001	Banana	nucleus	15.33	14.94
GSMUA_Achr8P15680_001	Banana	nucleus	18.12	14.44
GSMUA_Achr1P23500_001	Banana	nucleus	12.89	14.4
GSMUA_Achr9P22530_001	Banana	nucleus	16.03	14.29
GSMUA_Achr7P15850_001	Banana	nucleus	15.51	13.69
GSMUA_Achr4P06080_001	Banana	nucleus	9.76	12.1
Bra028576.1-P	Field mustard	cytosol	4.88	9.89
CDY47948	Canola	nucleus	7.84	8.95
Bra036336.1-P	Field mustard	nucleus	7.84	8.95

Protein Annotations

EnsemblPlants:GSMUA_Achr5P08460_001	EnsemblPlants:GSMUA_Achr5T08460_001	EnsemblPlantsGene:GSMUA_Achr5G08460_001	Gene3D:3.30.40.10	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR22937
PANTHER:PTHR22937:SF47	PFAM:PF13639	PFscan:PS50089	SEG:seg	SMART:SM00184	SUPFAM:SSF57850
TMHMM:TMhelix	UniParc:UPI0002962711	UniProt:M0SWS5	MapMan:35.1	:	:

Description

Putative zinc finger, C3HC4 type domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr5G08460_001]

Coordinates

chr5:+:6153333..6157023

Molecular Weight (calculated)

63837.2 Da

IEP (calculated)

7.479

GRAVY (calculated)

-0.717

Length

574 amino acids

Sequence
(BLAST)

001: MHQCGADRRL IVMNHICPRQ LLRHILVLFC IMFHYSLIES RKGARWVGST RIRALGFHST CDLTQTASMD HRHSTSQTQM SELDDERIWN HPQQDGLLNL
101: GNGSFVFPAN NVASNGVNPV TYFNPTLRAN GIQSTSFSSE VPRYATTVTG TSHDPCMHLP SGGSTSQPTH HSVHHGSSYN QHTLREGSSI GNPLMDHERA
201: TYKRKNPGSS MPPDRGNRNG YYSAGSSSQC WHPYHVSFVH SHRNDNASSS QEGSQRNVRS RRGNAIHLED ISPWISSSSN GSHHNNSNAN TLGAHMVGHW
301: SHTPVSMQPN ARVSSSEIGS FNHGINQSYV TSHATNNNLE TDGLYRSNLT PFPTPGPSAR GLAFGPSGYG QRTAYRANPS YPSMGLAPTP EDVGLPRMEP
401: AVPPRYSTPV SIARQSNERS GRRNRYNRFQ SFPNEENARV RQMEGVAMMG HPTLYDPMHM FDQHHGMRLD IDNMSYEELL ALEERIGDVS TGLSEDAIRT
501: SLSETIYCMS DRFQDGQDED RCAICLEAYD DRDPLGQLSC KHTFHSSCIT KWLSIKNVCP ICKASALEDT PKGE

Best Arabidopsis Sequence Match ( AT5G42940.1 )
(BLAST)

001: MQGERASLGY LSEALNFEHG SSSSNGVIDH WENIHSLGDN DLQDYMIANS ESNTSLANSV YHEQQGLRRF SLGEASSSGT KDEASSHNEQ RMETRCFDGR
101: GNEIIDLDPV FAQPSGTNQP VQNVNLNAEY IEIHEDINPY RGRSGFIEAN GPGTRVSQPG RSFEENGVGT GSSVEGRRAS CKRKALEGSI SQSSSGGYHD
201: FQRGESSSWT PGSTVFRPGN GLNISGSLDN GPRGMVSGTV PNFPVSAPNF PVSAIAESSS RNICVRSNPS DHQETVNPST FAAGTVVRRP VPPSQLNLSR
301: HLPADQHSLD LRPGQSFVVS RNPNSTPVSI PPGSRTMLPP FRWTGSSLVG GTSNSTAPVE RNLHLDETRS RSIPGNTLEI PMFAAPEVGN FARSQSSRNV
401: TNGNLNSASS VSRTGSTTSV PPPPPPSSNL AWTSYQNSPH YQRRRTERSE LARRSLLSSL AADATNQRSG DHPTLRSLAP PASSDGLVLQ PGGDNSQMHN
501: RAYSRAGPLF DRQGDSVVGI PHPLRALAAA SRGRSRLMVS QMQNVLDVMR RDANNNNLRL EDVMLLNHSV LFDGATGHDR YRDMRLDVDN MSYEELLALE
601: ERIGDVCTGV NEETISNRLK QRKYKSNTKS PQDAEPCCVC QEEYTEGEDM GTLECGHEFH SQCIKEWLKQ KNLCPICKTT GLNTAKKRRI A

Arabidopsis Description

RHG1AProbable E3 ubiquitin-protein ligase RHG1A [Source:UniProtKB/Swiss-Prot;Acc:Q9FMM4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.