Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU3Hr1G054920.1 | Barley | cytosol | 9.68 | 61.96 |
| Zm00001d019616_P001 | Maize | cytosol | 12.73 | 58.14 |
| Zm00001d015453_P001 | Maize | cytosol | 12.73 | 58.14 |
| Zm00001d013776_P001 | Maize | cytosol | 12.73 | 58.14 |
| GSMUA_AchrUn_... | Banana | nucleus | 19.35 | 50.67 |
| GSMUA_AchrUn_... | Banana | nucleus | 8.83 | 46.43 |
| GSMUA_Achr4P06090_001 | Banana | cytosol | 11.38 | 45.58 |
| TraesCS6B01G149700.2 | Wheat | nucleus | 40.58 | 42.38 |
| Os06t0695600-01 | Rice | nucleus | 40.75 | 41.45 |
| TraesCS6A01G121400.2 | Wheat | nucleus | 40.92 | 41.34 |
| TraesCS6D01G111500.2 | Wheat | nucleus | 41.26 | 40.3 |
| GSMUA_Achr6P03840_001 | Banana | nucleus | 24.96 | 39.62 |
| TraesCS7D01G420400.1 | Wheat | nucleus | 38.37 | 39.44 |
| TraesCS7B01G328500.1 | Wheat | nucleus | 38.2 | 38.93 |
| KXG20741 | Sorghum | nucleus | 38.88 | 38.81 |
| HORVU7Hr1G098540.1 | Barley | nucleus | 37.69 | 37.88 |
| EES04530 | Sorghum | nucleus | 33.28 | 37.84 |
| Zm00001d014609_P002 | Maize | nucleus | 37.01 | 37.27 |
| Zm00001d015289_P001 | Maize | nucleus | 35.65 | 37.1 |
| Os02t0150700-01 | Rice | extracellular | 39.73 | 36.51 |
| TraesCS7A01G428300.2 | Wheat | nucleus | 34.63 | 35.11 |
| GSMUA_Achr4P03550_001 | Banana | mitochondrion | 3.57 | 35.0 |
| HORVU6Hr1G022370.10 | Barley | mitochondrion | 41.09 | 34.82 |
| GSMUA_Achr10P... | Banana | nucleus | 28.18 | 32.81 |
| GSMUA_Achr1P23500_001 | Banana | nucleus | 26.83 | 30.74 |
| GSMUA_Achr7P15850_001 | Banana | nucleus | 31.75 | 28.77 |
| GSMUA_Achr9P21480_001 | Banana | plastid | 13.24 | 22.94 |
| GSMUA_Achr8P31290_001 | Banana | nucleus | 9.85 | 22.92 |
| GSMUA_Achr1P23200_001 | Banana | nucleus | 12.9 | 21.11 |
| GSMUA_Achr4P13930_001 | Banana | nucleus | 8.66 | 20.56 |
| GSMUA_Achr4P11130_001 | Banana | nucleus, plastid | 11.54 | 20.36 |
| GSMUA_Achr4P12850_001 | Banana | nucleus | 14.43 | 18.64 |
| GSMUA_Achr3P29390_001 | Banana | golgi, plastid | 11.88 | 18.42 |
| GSMUA_Achr3P13740_001 | Banana | nucleus | 14.94 | 17.96 |
| GSMUA_Achr4P04290_001 | Banana | nucleus | 6.62 | 17.57 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, peroxisome | 14.26 | 16.41 |
| GSMUA_Achr4P03540_001 | Banana | nucleus | 5.43 | 16.24 |
| GSMUA_Achr3P26700_001 | Banana | nucleus | 7.98 | 16.1 |
| GSMUA_Achr4P05140_001 | Banana | nucleus | 7.98 | 15.88 |
| GSMUA_Achr5P08460_001 | Banana | nucleus | 14.94 | 15.33 |
| GSMUA_Achr9P24150_001 | Banana | nucleus | 7.81 | 15.28 |
| GSMUA_Achr9P11290_001 | Banana | nucleus | 17.15 | 14.49 |
| GSMUA_Achr4P04180_001 | Banana | mitochondrion, nucleus, peroxisome, plastid | 7.47 | 14.33 |
| GSMUA_Achr9P22530_001 | Banana | nucleus | 15.62 | 14.29 |
| GSMUA_Achr8P15680_001 | Banana | nucleus | 17.32 | 14.17 |
| GSMUA_Achr4P30500_001 | Banana | nucleus | 7.81 | 13.57 |
| GSMUA_Achr4P06080_001 | Banana | nucleus | 7.47 | 9.5 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr3P05160_001 | EnsemblPlants:GSMUA_Achr3T05160_001 | EnsemblPlantsGene:GSMUA_Achr3G05160_001 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR22937 | PANTHER:PTHR22937:SF99 | PFAM:PF13639 | PFscan:PS50089 |
| SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI00029524F3 | UniProt:M0SBY4 | MapMan:35.1 |
Description
Putative zinc finger, C3HC4 type domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr3G05160_001]
Coordinates
chr3:-:3361875..3365197
Molecular Weight (calculated)
64890.1 Da
IEP (calculated)
8.078
GRAVY (calculated)
-0.752
Length
589 amino acids
Sequence
(BLAST)
(BLAST)
001: MDEYVSNRAS RGESFARRGS NLSFRDHSQE DRHVQNYRRS GCSSRVGSTR GPQVVTPERH KHVRAPFRSA SGKAIAGSTS KSSSISGSHR KAFQEQHDQT
101: FLQESVVEER STRQQIDDID SNDRQVRANN FNSEGRQARK EDTDSVSLTT NSRKSSLLKG VSTAKSKSSN GCSSASSSKM HKQISGQLVS GNQEASSSSF
201: VPRSFAVSSR NSASAAKSFS QVLDTESPRC GLQNLSCTSI YDVCPSGCSS DLTGDKRIVM VRKRQSDGES SATSGRGSNA SPGGGYSGST YSETFVPHLP
301: ISGRIMHQSV SRSRSRLTIR DGAVSVRTQR ASPGDNRMRP SEEGNGSTLA LDDPTPTPQL QQMHFSVPEA VHESSTTAFT TDLPYVFNDS SGRPSSSNCV
401: IRSRSVSRPE SSSTPITHRS FGDRHGHRRL NMEGVAEVLL ALERIERNEE LTYEQLLVLE TNVLWGALRF HDQHRDMRMD IDNMSYEELL ALEEKMGTVS
501: TALTEEQMTK CLKRITYACA SLVPGITSHD NDDAKCSICQ EDYIDGEEVA RLPCEHLYHV ACIDQWLRQK NWCPICKSSA LPSKETAQN
101: FLQESVVEER STRQQIDDID SNDRQVRANN FNSEGRQARK EDTDSVSLTT NSRKSSLLKG VSTAKSKSSN GCSSASSSKM HKQISGQLVS GNQEASSSSF
201: VPRSFAVSSR NSASAAKSFS QVLDTESPRC GLQNLSCTSI YDVCPSGCSS DLTGDKRIVM VRKRQSDGES SATSGRGSNA SPGGGYSGST YSETFVPHLP
301: ISGRIMHQSV SRSRSRLTIR DGAVSVRTQR ASPGDNRMRP SEEGNGSTLA LDDPTPTPQL QQMHFSVPEA VHESSTTAFT TDLPYVFNDS SGRPSSSNCV
401: IRSRSVSRPE SSSTPITHRS FGDRHGHRRL NMEGVAEVLL ALERIERNEE LTYEQLLVLE TNVLWGALRF HDQHRDMRMD IDNMSYEELL ALEEKMGTVS
501: TALTEEQMTK CLKRITYACA SLVPGITSHD NDDAKCSICQ EDYIDGEEVA RLPCEHLYHV ACIDQWLRQK NWCPICKSSA LPSKETAQN
001: MDGFKGKRTS RPIMPRKASG LVLHENMKKK DDKSVVPICS RIGCSSRVSS TKGDLIDHKA KATVSSFRSP LSGKETVGSS SRSMSGFGGT KKASKVIGRR
101: QLSSLLDMDS SESSSVNEDS PTSERSLPRG KTKESTISVH SESSVSGEVV TEAGSSSRGT GRSIHQRPDL VSRDARVSNS EQNARASVNK NGLRDLRNKS
201: GSDVLPSNST PTRKSNIFRK KTSDGESSSS SRGNKTEGSV VGGKNISSPQ GNGITMSEPR RNRNLPSVRD NSVVSSSTRR STGYYGRTGR AGAVATLQAP
301: RPPTRADLNP SRSAEASRSP LNSYSRPISS NGRLRSLMMP GSPSEAGLSR SLMNRDTFRR YNMNGVAEVL LALERIEQDE ELTYEQLAVL ETNLFLNGMS
401: SFHDQHRDMR LDIDNMSYEE LLALEEKMGT VSTALSEEAL LKSLKSSIYR PNDESDDICL NKDDDVKCSI CQEEYVDGDE VGTLPCQHKY HVSCAQQWLR
501: MKNWCPICKT SAESQPHPFS
101: QLSSLLDMDS SESSSVNEDS PTSERSLPRG KTKESTISVH SESSVSGEVV TEAGSSSRGT GRSIHQRPDL VSRDARVSNS EQNARASVNK NGLRDLRNKS
201: GSDVLPSNST PTRKSNIFRK KTSDGESSSS SRGNKTEGSV VGGKNISSPQ GNGITMSEPR RNRNLPSVRD NSVVSSSTRR STGYYGRTGR AGAVATLQAP
301: RPPTRADLNP SRSAEASRSP LNSYSRPISS NGRLRSLMMP GSPSEAGLSR SLMNRDTFRR YNMNGVAEVL LALERIEQDE ELTYEQLAVL ETNLFLNGMS
401: SFHDQHRDMR LDIDNMSYEE LLALEEKMGT VSTALSEEAL LKSLKSSIYR PNDESDDICL NKDDDVKCSI CQEEYVDGDE VGTLPCQHKY HVSCAQQWLR
501: MKNWCPICKT SAESQPHPFS
Arabidopsis Description
At5g24870 [Source:UniProtKB/TrEMBL;Acc:Q8L775]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.