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Banana
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • plastid 4
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
HORVU3Hr1G054920.1 Barley cytosol 14.02 56.52
Zm00001d015453_P001 Maize cytosol 18.06 51.94
Zm00001d019616_P001 Maize cytosol 17.52 50.39
Zm00001d013776_P001 Maize cytosol 17.25 49.61
GSMUA_Achr10P... Banana nucleus 64.96 47.63
GSMUA_AchrUn_... Banana nucleus 27.22 44.89
GSMUA_AchrUn_... Banana nucleus 13.21 43.75
GSMUA_Achr4P06090_001 Banana cytosol 16.71 42.18
GSMUA_Achr7P15850_001 Banana nucleus 62.26 35.54
GSMUA_Achr4P03550_001 Banana mitochondrion 5.12 31.67
TraesCS6B01G149700.2 Wheat nucleus 38.81 25.53
GSMUA_Achr3P05160_001 Banana nucleus 39.62 24.96
TraesCS6A01G121400.2 Wheat nucleus 38.81 24.7
Os06t0695600-01 Rice nucleus 38.01 24.35
GSMUA_Achr1P23500_001 Banana nucleus 32.88 23.74
TraesCS6D01G111500.2 Wheat nucleus 38.27 23.55
HORVU7Hr1G098540.1 Barley nucleus 36.12 22.87
TraesCS7D01G420400.1 Wheat nucleus 35.31 22.86
TraesCS7B01G328500.1 Wheat nucleus 35.58 22.84
Zm00001d015289_P001 Maize nucleus 33.42 21.91
KXG20741 Sorghum nucleus 34.77 21.86
GSMUA_Achr9P21480_001 Banana plastid 19.95 21.76
EES04530 Sorghum nucleus 29.38 21.04
Os02t0150700-01 Rice extracellular 35.85 20.75
Zm00001d014609_P002 Maize nucleus 32.61 20.68
GSMUA_Achr4P11130_001 Banana nucleus, plastid 18.33 20.36
HORVU6Hr1G022370.10 Barley mitochondrion 37.47 20.0
TraesCS7A01G428300.2 Wheat nucleus 29.92 19.11
GSMUA_Achr4P12850_001 Banana nucleus 22.64 18.42
GSMUA_Achr3P29390_001 Banana golgi, plastid 18.6 18.16
GSMUA_Achr4P04290_001 Banana nucleus 10.78 18.02
GSMUA_Achr1P23200_001 Banana nucleus 16.98 17.5
GSMUA_Achr8P31290_001 Banana nucleus 11.59 17.0
GSMUA_Achr4P13930_001 Banana nucleus 11.05 16.53
GSMUA_Achr9P24150_001 Banana nucleus 12.67 15.61
GSMUA_Achr4P05140_001 Banana nucleus 12.13 15.2
GSMUA_Achr3P13740_001 Banana nucleus 19.95 15.1
GSMUA_Achr11P... Banana cytosol, nucleus, peroxisome 20.49 14.84
GSMUA_Achr3P26700_001 Banana nucleus 11.05 14.04
GSMUA_Achr4P04180_001 Banana mitochondrion, nucleus, peroxisome, plastid 11.05 13.36
GSMUA_Achr4P03540_001 Banana nucleus 6.47 12.18
GSMUA_Achr9P22530_001 Banana nucleus 21.02 12.11
GSMUA_Achr9P11290_001 Banana nucleus 22.37 11.91
GSMUA_Achr5P08460_001 Banana nucleus 18.33 11.85
GSMUA_Achr4P30500_001 Banana nucleus 10.78 11.8
GSMUA_Achr8P15680_001 Banana nucleus 22.64 11.67
GSMUA_Achr4P06080_001 Banana nucleus 11.59 9.29
Protein Annotations
EnsemblPlants:GSMUA_Achr6P03840_001EnsemblPlants:GSMUA_Achr6T03840_001EnsemblPlantsGene:GSMUA_Achr6G03840_001Gene3D:3.30.40.10InterPro:IPR001841InterPro:IPR013083
InterPro:Znf_RINGInterPro:Znf_RING/FYVE/PHDPANTHER:PTHR22937PANTHER:PTHR22937:SF99PFAM:PF13639PFscan:PS50089
SEG:segSMART:SM00184SUPFAM:SSF57850UniParc:UPI000296457DUniProt:M0T3Y2MapMan:35.1
Description
Putative zinc finger, C3HC4 type domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G03840_001]
Coordinates
chr6:+:2640404..2645544
Molecular Weight (calculated)
40943.6 Da
IEP (calculated)
6.050
GRAVY (calculated)
-0.592
Length
371 amino acids
Sequence
(BLAST)
001: MAYTYASHPA KPVAQRLSSG AEGCGLNRLS CTSISDVLSS GASSSGFTHH GRVDTVRKRP SEGESSTSRC KGAGASSTER YVVSMHTGSG SSSSSMSKVT
101: HQPVSRRTRN QPTTGDGSVS VGTGRASTGE SQRRLSAQAD YNILPLDEPI MLPQYQRNQF SLAEAPPESS SRSSHAFRNS YERPVSSSQT FRSRSMSQPE
201: DNNTQMLFGS SGDGYHHFNV EGIAEALLAL EHIEQDDELT YEQLSVLETS LFFCGLSFHD QHRALRMDIE NMSYEELLAL EEKMGTVSTA LSEEQLSKCL
301: KRNLYEPTYQ ATGIAVCGDE NMKCSICQEE FIREQEVGEL QCEHLYHATC IEQWLRRKNW CPICKSSALP L
Best Arabidopsis Sequence Match ( AT5G24870.3 )
(BLAST)
001: MDGFKGKRTS RPIMPRKASG LVLHENMKKK DDKSVVPICS RIGCSSRVSS TKGDLIDHKA KATVSSFRSP LSGKETVGSS SRSMSGFGGT KKASKVIGRR
101: QLSSLLDMDS SESSSVNEDS PTSERSLPRG KTKESTISVH SESSVSGEVV TEAGSSSRGT GRSIHQRPDL VSRDARVSNS EQNARASVNK NGLRDLRNKS
201: GSDVLPSNST PTRKSNIFRK KTSDGESSSS SRGNKTEGSV VGGKNISSPQ GNGITMSEPR RNRNLPSVRD NSVVSSSTRR STGYYGRTGR AGAVATLQAP
301: RPPTRADLNP SRSAEASRSP LNSYSRPISS NGRLRSLMMP GSPSEAGLSR SLMNRDTFRR YNMNGVAEVL LALERIEQDE ELTYEQLAVL ETNLFLNGMS
401: SFHDQHRDMR LDIDNMSYEE LLALEEKMGT VSTALSEEAL LKSLKSSIYR PNDESDDICL NKDDDVKCSI CQEEYVDGDE VGTLPCQHKY HVSCAQQWLR
501: MKNWCPICKT SAESQPHPFS
Arabidopsis Description
At5g24870 [Source:UniProtKB/TrEMBL;Acc:Q8L775]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.