Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 4
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
HORVU3Hr1G054920.1 | Barley | cytosol | 14.02 | 56.52 |
Zm00001d015453_P001 | Maize | cytosol | 18.06 | 51.94 |
Zm00001d019616_P001 | Maize | cytosol | 17.52 | 50.39 |
Zm00001d013776_P001 | Maize | cytosol | 17.25 | 49.61 |
GSMUA_Achr10P... | Banana | nucleus | 64.96 | 47.63 |
GSMUA_AchrUn_... | Banana | nucleus | 27.22 | 44.89 |
GSMUA_AchrUn_... | Banana | nucleus | 13.21 | 43.75 |
GSMUA_Achr4P06090_001 | Banana | cytosol | 16.71 | 42.18 |
GSMUA_Achr7P15850_001 | Banana | nucleus | 62.26 | 35.54 |
GSMUA_Achr4P03550_001 | Banana | mitochondrion | 5.12 | 31.67 |
TraesCS6B01G149700.2 | Wheat | nucleus | 38.81 | 25.53 |
GSMUA_Achr3P05160_001 | Banana | nucleus | 39.62 | 24.96 |
TraesCS6A01G121400.2 | Wheat | nucleus | 38.81 | 24.7 |
Os06t0695600-01 | Rice | nucleus | 38.01 | 24.35 |
GSMUA_Achr1P23500_001 | Banana | nucleus | 32.88 | 23.74 |
TraesCS6D01G111500.2 | Wheat | nucleus | 38.27 | 23.55 |
HORVU7Hr1G098540.1 | Barley | nucleus | 36.12 | 22.87 |
TraesCS7D01G420400.1 | Wheat | nucleus | 35.31 | 22.86 |
TraesCS7B01G328500.1 | Wheat | nucleus | 35.58 | 22.84 |
Zm00001d015289_P001 | Maize | nucleus | 33.42 | 21.91 |
KXG20741 | Sorghum | nucleus | 34.77 | 21.86 |
GSMUA_Achr9P21480_001 | Banana | plastid | 19.95 | 21.76 |
EES04530 | Sorghum | nucleus | 29.38 | 21.04 |
Os02t0150700-01 | Rice | extracellular | 35.85 | 20.75 |
Zm00001d014609_P002 | Maize | nucleus | 32.61 | 20.68 |
GSMUA_Achr4P11130_001 | Banana | nucleus, plastid | 18.33 | 20.36 |
HORVU6Hr1G022370.10 | Barley | mitochondrion | 37.47 | 20.0 |
TraesCS7A01G428300.2 | Wheat | nucleus | 29.92 | 19.11 |
GSMUA_Achr4P12850_001 | Banana | nucleus | 22.64 | 18.42 |
GSMUA_Achr3P29390_001 | Banana | golgi, plastid | 18.6 | 18.16 |
GSMUA_Achr4P04290_001 | Banana | nucleus | 10.78 | 18.02 |
GSMUA_Achr1P23200_001 | Banana | nucleus | 16.98 | 17.5 |
GSMUA_Achr8P31290_001 | Banana | nucleus | 11.59 | 17.0 |
GSMUA_Achr4P13930_001 | Banana | nucleus | 11.05 | 16.53 |
GSMUA_Achr9P24150_001 | Banana | nucleus | 12.67 | 15.61 |
GSMUA_Achr4P05140_001 | Banana | nucleus | 12.13 | 15.2 |
GSMUA_Achr3P13740_001 | Banana | nucleus | 19.95 | 15.1 |
GSMUA_Achr11P... | Banana | cytosol, nucleus, peroxisome | 20.49 | 14.84 |
GSMUA_Achr3P26700_001 | Banana | nucleus | 11.05 | 14.04 |
GSMUA_Achr4P04180_001 | Banana | mitochondrion, nucleus, peroxisome, plastid | 11.05 | 13.36 |
GSMUA_Achr4P03540_001 | Banana | nucleus | 6.47 | 12.18 |
GSMUA_Achr9P22530_001 | Banana | nucleus | 21.02 | 12.11 |
GSMUA_Achr9P11290_001 | Banana | nucleus | 22.37 | 11.91 |
GSMUA_Achr5P08460_001 | Banana | nucleus | 18.33 | 11.85 |
GSMUA_Achr4P30500_001 | Banana | nucleus | 10.78 | 11.8 |
GSMUA_Achr8P15680_001 | Banana | nucleus | 22.64 | 11.67 |
GSMUA_Achr4P06080_001 | Banana | nucleus | 11.59 | 9.29 |
Protein Annotations
EnsemblPlants:GSMUA_Achr6P03840_001 | EnsemblPlants:GSMUA_Achr6T03840_001 | EnsemblPlantsGene:GSMUA_Achr6G03840_001 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 |
InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR22937 | PANTHER:PTHR22937:SF99 | PFAM:PF13639 | PFscan:PS50089 |
SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI000296457D | UniProt:M0T3Y2 | MapMan:35.1 |
Description
Putative zinc finger, C3HC4 type domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G03840_001]
Coordinates
chr6:+:2640404..2645544
Molecular Weight (calculated)
40943.6 Da
IEP (calculated)
6.050
GRAVY (calculated)
-0.592
Length
371 amino acids
Sequence
(BLAST)
(BLAST)
001: MAYTYASHPA KPVAQRLSSG AEGCGLNRLS CTSISDVLSS GASSSGFTHH GRVDTVRKRP SEGESSTSRC KGAGASSTER YVVSMHTGSG SSSSSMSKVT
101: HQPVSRRTRN QPTTGDGSVS VGTGRASTGE SQRRLSAQAD YNILPLDEPI MLPQYQRNQF SLAEAPPESS SRSSHAFRNS YERPVSSSQT FRSRSMSQPE
201: DNNTQMLFGS SGDGYHHFNV EGIAEALLAL EHIEQDDELT YEQLSVLETS LFFCGLSFHD QHRALRMDIE NMSYEELLAL EEKMGTVSTA LSEEQLSKCL
301: KRNLYEPTYQ ATGIAVCGDE NMKCSICQEE FIREQEVGEL QCEHLYHATC IEQWLRRKNW CPICKSSALP L
101: HQPVSRRTRN QPTTGDGSVS VGTGRASTGE SQRRLSAQAD YNILPLDEPI MLPQYQRNQF SLAEAPPESS SRSSHAFRNS YERPVSSSQT FRSRSMSQPE
201: DNNTQMLFGS SGDGYHHFNV EGIAEALLAL EHIEQDDELT YEQLSVLETS LFFCGLSFHD QHRALRMDIE NMSYEELLAL EEKMGTVSTA LSEEQLSKCL
301: KRNLYEPTYQ ATGIAVCGDE NMKCSICQEE FIREQEVGEL QCEHLYHATC IEQWLRRKNW CPICKSSALP L
001: MDGFKGKRTS RPIMPRKASG LVLHENMKKK DDKSVVPICS RIGCSSRVSS TKGDLIDHKA KATVSSFRSP LSGKETVGSS SRSMSGFGGT KKASKVIGRR
101: QLSSLLDMDS SESSSVNEDS PTSERSLPRG KTKESTISVH SESSVSGEVV TEAGSSSRGT GRSIHQRPDL VSRDARVSNS EQNARASVNK NGLRDLRNKS
201: GSDVLPSNST PTRKSNIFRK KTSDGESSSS SRGNKTEGSV VGGKNISSPQ GNGITMSEPR RNRNLPSVRD NSVVSSSTRR STGYYGRTGR AGAVATLQAP
301: RPPTRADLNP SRSAEASRSP LNSYSRPISS NGRLRSLMMP GSPSEAGLSR SLMNRDTFRR YNMNGVAEVL LALERIEQDE ELTYEQLAVL ETNLFLNGMS
401: SFHDQHRDMR LDIDNMSYEE LLALEEKMGT VSTALSEEAL LKSLKSSIYR PNDESDDICL NKDDDVKCSI CQEEYVDGDE VGTLPCQHKY HVSCAQQWLR
501: MKNWCPICKT SAESQPHPFS
101: QLSSLLDMDS SESSSVNEDS PTSERSLPRG KTKESTISVH SESSVSGEVV TEAGSSSRGT GRSIHQRPDL VSRDARVSNS EQNARASVNK NGLRDLRNKS
201: GSDVLPSNST PTRKSNIFRK KTSDGESSSS SRGNKTEGSV VGGKNISSPQ GNGITMSEPR RNRNLPSVRD NSVVSSSTRR STGYYGRTGR AGAVATLQAP
301: RPPTRADLNP SRSAEASRSP LNSYSRPISS NGRLRSLMMP GSPSEAGLSR SLMNRDTFRR YNMNGVAEVL LALERIEQDE ELTYEQLAVL ETNLFLNGMS
401: SFHDQHRDMR LDIDNMSYEE LLALEEKMGT VSTALSEEAL LKSLKSSIYR PNDESDDICL NKDDDVKCSI CQEEYVDGDE VGTLPCQHKY HVSCAQQWLR
501: MKNWCPICKT SAESQPHPFS
Arabidopsis Description
At5g24870 [Source:UniProtKB/TrEMBL;Acc:Q8L775]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.