Factsheet for Os06t0695600-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G328500.1	Wheat	nucleus	68.39	68.51
HORVU7Hr1G098540.1	Barley	nucleus	68.05	67.24
TraesCS7D01G420400.1	Wheat	nucleus	65.98	66.67
TraesCS7A01G428300.2	Wheat	nucleus	62.0	61.79
KXG20741	Sorghum	nucleus	62.18	61.02
Zm00001d014609_P002	Maize	nucleus	59.07	58.46
Os02t0150700-01	Rice	extracellular	52.16	47.11
CDX97032	Canola	plastid	25.04	43.28
CDY71882	Canola	plastid	25.56	42.29
GSMUA_Achr3P05160_001	Banana	nucleus	41.45	40.75
GSMUA_Achr6P03840_001	Banana	nucleus	24.35	38.01
VIT_04s0008g02390.t01	Wine grape	nucleus	34.72	36.55
CDX85750	Canola	nucleus	24.35	36.53
Bra024009.1-P	Field mustard	nucleus	10.88	36.0
CDX95473	Canola	nucleus	28.15	35.13
KRH04957	Soybean	nucleus	32.12	34.96
CDY40109	Canola	nucleus	11.23	34.95
CDX88140	Canola	nucleus	29.02	34.85
CDY68658	Canola	nucleus	27.98	34.54
KRH52597	Soybean	nucleus	31.95	34.2
CDX70363	Canola	nucleus	28.32	33.74
Bra006070.1-P	Field mustard	nucleus	28.84	33.74
CDX78393	Canola	nucleus	28.67	33.6
KRH16134	Soybean	nucleus	32.12	33.51
PGSC0003DMT400067670	Potato	nucleus	29.88	32.77
CDX97044	Canola	nucleus	28.84	32.75
CDY13429	Canola	cytosol	14.51	32.56
AT5G24870.2	Thale cress	nucleus	29.19	32.5
Solyc08g006460.2.1	Tomato	nucleus	29.71	32.39
AT5G10650.2	Thale cress	nucleus	28.32	31.24
Solyc12g096420.1.1	Tomato	nucleus	29.53	31.03
GSMUA_Achr10P...	Banana	nucleus	26.77	30.63
Bra009015.1-P	Field mustard	plastid	28.15	30.58
CDX69813	Canola	mitochondrion	28.15	30.58
PGSC0003DMT400075959	Potato	nucleus	28.67	30.46
KRH61936	Soybean	nucleus	28.15	29.26
Os08t0241400-00	Rice	nucleus	17.96	27.59
Bra009800.1-P	Field mustard	nucleus	18.83	26.59
GSMUA_Achr7P15850_001	Banana	nucleus	27.81	24.77
Os04t0603200-01	Rice	nucleus	13.99	24.62
Os05t0550000-00	Rice	nucleus	14.16	22.53
Bra024007.1-P	Field mustard	nucleus	17.1	21.2
CDY63645	Canola	nucleus	16.75	21.0
CDY13433	Canola	nucleus	16.75	20.82
Os03t0173900-01	Rice	nucleus	8.81	20.4
AT4G31450.2	Thale cress	nucleus	17.1	19.92
Os04t0571200-01	Rice	nucleus	8.29	18.9
Os01t0159300-01	Rice	nucleus	14.51	16.77
Os06t0125800-01	Rice	nucleus	7.43	16.48
Os08t0548300-01	Rice	nucleus	8.64	16.39
Os01t0667700-02	Rice	nucleus	14.51	16.03
Os05t0564300-01	Rice	nucleus	13.82	16.0
Os09t0535100-01	Rice	nucleus	8.81	15.69
Os05t0163400-03	Rice	nucleus	13.99	15.2
Os04t0648800-01	Rice	nucleus	17.1	14.84
Os04t0185500-01	Rice	nucleus	17.79	14.53

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	EntrezGene:4341936	EMBL:AK066069	ProteinID:BAD53902.1	ProteinID:BAF20365.1
ProteinID:BAS99282.1	ProteinID:EEE66280.1	InterPro:IPR001841	InterPro:IPR013083	EnsemblPlantsGene:Os06g0695600	EnsemblPlants:Os06t0695600-01
PFAM:PF13639	PFscan:PS50089	PANTHER:PTHR22937	PANTHER:PTHR22937:SF99	UniProt:Q5Z8H4	SMART:SM00184
SUPFAM:SSF57850	UniParc:UPI0000446EC2	RefSeq:XP_015644229.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

RING finger proteinZinc finger, RING/FYVE/PHD-type domain containing protein. (Os06t0695600-01)

Coordinates

chr6:-:29059705..29063780

Molecular Weight (calculated)

64755.4 Da

IEP (calculated)

7.331

GRAVY (calculated)

-0.858

Length

579 amino acids

Sequence
(BLAST)

001: MEEDSGRSIS TTGFLRRGSS VSLKDQGNEE RPNKTKLNPM NARWADSKEK PRYLREPFRS SGTKAACPSS SKAPVRKYFE EKQGRTFLGE ADNAESSSRR
101: TEANRLQCSK KAVVEEDVHP YGQQDEPEDL LSTSTTEDQP AELDPELLDS SVSSGVSAHA IGSVVRNAAL RSKSRQQKGK EELCQIRPQT ASAFVNRSTI
201: PRNSTNGVKS SNAAGPGVQR RTLKNLGCTS ISDVLPSGCS SANSIHNKRA EVMRNRAFDG ESSSRPRGLN GHSSLGHSPA MYSGITGPRV RTAEQSASQQ
301: TRTSSRSIQE SADSSRIRRP STQHARVRVP NEREDSVFAL RETLARDRQP EWAHFSLGEA APRRSMRPFS MELPHEIYSS SRQGSSNQTA RSRSSYRPDE
401: SPPQMFHGLL VERENYRRIN MEGIAEVLLA LDRIEQDDEL TYEQLLVLET NLFLSGLGLH DQHRDMRMDI DNMSYEELLA LEERIGSVST ALSDEQLVKC
501: LKRNVYKLPN SDLEANRAVL DDAKCSICQE EYIEGEEVGR MQCEHQYHVS CIHEWLRQKN WCPICKTSAI PSEMDKGGT

Best Arabidopsis Sequence Match ( AT5G24870.3 )
(BLAST)

001: MDGFKGKRTS RPIMPRKASG LVLHENMKKK DDKSVVPICS RIGCSSRVSS TKGDLIDHKA KATVSSFRSP LSGKETVGSS SRSMSGFGGT KKASKVIGRR
101: QLSSLLDMDS SESSSVNEDS PTSERSLPRG KTKESTISVH SESSVSGEVV TEAGSSSRGT GRSIHQRPDL VSRDARVSNS EQNARASVNK NGLRDLRNKS
201: GSDVLPSNST PTRKSNIFRK KTSDGESSSS SRGNKTEGSV VGGKNISSPQ GNGITMSEPR RNRNLPSVRD NSVVSSSTRR STGYYGRTGR AGAVATLQAP
301: RPPTRADLNP SRSAEASRSP LNSYSRPISS NGRLRSLMMP GSPSEAGLSR SLMNRDTFRR YNMNGVAEVL LALERIEQDE ELTYEQLAVL ETNLFLNGMS
401: SFHDQHRDMR LDIDNMSYEE LLALEEKMGT VSTALSEEAL LKSLKSSIYR PNDESDDICL NKDDDVKCSI CQEEYVDGDE VGTLPCQHKY HVSCAQQWLR
501: MKNWCPICKT SAESQPHPFS

Arabidopsis Description

At5g24870 [Source:UniProtKB/TrEMBL;Acc:Q8L775]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.