Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY13429 | Canola | cytosol | 42.66 | 82.17 |
| Bra024007.1-P | Field mustard | nucleus | 76.06 | 80.94 |
| CDY63645 | Canola | nucleus | 75.05 | 80.74 |
| CDY13433 | Canola | nucleus | 75.65 | 80.69 |
| Bra024009.1-P | Field mustard | nucleus | 25.55 | 72.57 |
| HORVU3Hr1G054920.1 | Barley | cytosol | 8.45 | 45.65 |
| Zm00001d015453_P001 | Maize | cytosol | 10.87 | 41.86 |
| Zm00001d019616_P001 | Maize | cytosol | 10.66 | 41.09 |
| Zm00001d013776_P001 | Maize | cytosol | 10.66 | 41.09 |
| GSMUA_AchrUn_... | Banana | nucleus | 15.29 | 33.78 |
| OQU80147 | Sorghum | nucleus | 15.9 | 22.07 |
| Zm00001d024406_P002 | Maize | nucleus | 15.49 | 21.51 |
| TraesCS2B01G456100.1 | Wheat | nucleus | 15.9 | 21.18 |
| TraesCS2A01G437200.1 | Wheat | nucleus | 15.49 | 20.87 |
| AT5G24870.2 | Thale cress | nucleus | 21.73 | 20.77 |
| TraesCS2D01G432800.1 | Wheat | nucleus | 15.49 | 20.7 |
| HORVU2Hr1G101370.5 | Barley | nucleus | 15.49 | 20.53 |
| AT5G52155.1 | Thale cress | nucleus | 7.44 | 20.33 |
| EES12797 | Sorghum | nucleus | 15.29 | 20.32 |
| VIT_04s0008g02390.t01 | Wine grape | nucleus | 22.13 | 20.0 |
| AT5G10650.2 | Thale cress | nucleus | 20.72 | 19.62 |
| AT4G00070.1 | Thale cress | nucleus | 7.04 | 19.55 |
| AT3G47180.1 | Thale cress | cytosol | 8.25 | 19.52 |
| Solyc08g006460.2.1 | Tomato | nucleus | 20.72 | 19.4 |
| PGSC0003DMT400067670 | Potato | nucleus | 20.52 | 19.32 |
| Zm00001d026248_P001 | Maize | nucleus | 14.49 | 18.95 |
| Os08t0241400-00 | Rice | nucleus | 14.29 | 18.83 |
| KRH04957 | Soybean | nucleus | 20.12 | 18.8 |
| KRH16134 | Soybean | nucleus | 20.93 | 18.74 |
| PGSC0003DMT400075959 | Potato | nucleus | 20.52 | 18.72 |
| GSMUA_Achr1P23500_001 | Banana | nucleus | 19.32 | 18.68 |
| EES04530 | Sorghum | nucleus | 18.91 | 18.15 |
| KRH52597 | Soybean | nucleus | 19.72 | 18.11 |
| AT1G53190.1 | Thale cress | nucleus | 17.91 | 18.02 |
| Solyc12g096420.1.1 | Tomato | nucleus | 19.92 | 17.97 |
| Zm00001d002416_P002 | Maize | endoplasmic reticulum, extracellular, vacuole | 14.29 | 17.88 |
| AT2G37150.3 | Thale cress | endoplasmic reticulum, extracellular | 21.53 | 17.86 |
| AT3G63530.2 | Thale cress | cytosol | 8.85 | 17.74 |
| AT1G73760.1 | Thale cress | nucleus, plastid | 12.68 | 17.17 |
| Os06t0695600-01 | Rice | nucleus | 19.92 | 17.1 |
| Zm00001d014609_P002 | Maize | nucleus | 19.92 | 16.92 |
| HORVU7Hr1G098540.1 | Barley | nucleus | 19.72 | 16.72 |
| AT3G15070.1 | Thale cress | nucleus | 16.3 | 16.67 |
| TraesCS7B01G328500.1 | Wheat | nucleus | 19.32 | 16.61 |
| TraesCS7D01G420400.1 | Wheat | nucleus | 19.11 | 16.58 |
| KXG20741 | Sorghum | nucleus | 19.52 | 16.44 |
| Os04t0603200-01 | Rice | nucleus | 10.87 | 16.41 |
| Zm00001d015289_P001 | Maize | nucleus | 18.51 | 16.25 |
| AT5G52140.1 | Thale cress | nucleus | 9.05 | 16.07 |
| TraesCS6B01G149700.2 | Wheat | nucleus | 18.11 | 15.96 |
| TraesCS6A01G121400.2 | Wheat | nucleus | 18.31 | 15.61 |
| Os02t0150700-01 | Rice | extracellular | 20.12 | 15.6 |
| AT1G36950.1 | Thale cress | cytosol | 7.04 | 15.49 |
| KRH61936 | Soybean | nucleus | 17.1 | 15.26 |
| TraesCS6D01G111500.2 | Wheat | nucleus | 18.31 | 15.09 |
| AT1G17970.1 | Thale cress | nucleus | 10.87 | 14.67 |
| AT5G52150.1 | Thale cress | cytosol, nucleus, peroxisome | 5.63 | 14.0 |
| HORVU6Hr1G022370.10 | Barley | mitochondrion | 18.71 | 13.38 |
| AT1G45180.3 | Thale cress | nucleus | 17.3 | 13.33 |
| AT5G42940.1 | Thale cress | nucleus | 17.91 | 12.88 |
| AT4G34040.1 | Thale cress | nucleus | 17.1 | 12.76 |
| AT3G19910.1 | Thale cress | nucleus | 8.65 | 12.65 |
| TraesCS7A01G428300.2 | Wheat | nucleus | 14.69 | 12.56 |
| AT2G15530.4 | Thale cress | nucleus | 16.7 | 10.64 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | EntrezGene:829272 | ProteinID:AEE85915.1 | EMBL:AF424605 | ProteinID:ANM67430.1 |
| ArrayExpress:AT4G31450 | EnsemblPlantsGene:AT4G31450 | RefSeq:AT4G31450 | TAIR:AT4G31450 | RefSeq:AT4G31450-TAIR-G | EnsemblPlants:AT4G31450.2 |
| Unigene:At.20136 | EMBL:BT002300 | InterPro:IPR001841 | InterPro:IPR013083 | RefSeq:NP_001329261.1 | RefSeq:NP_567877.1 |
| PFAM:PF13639 | PFscan:PS50089 | PANTHER:PTHR22937 | PANTHER:PTHR22937:SF53 | UniProt:Q944Q9 | SMART:SM00184 |
| SUPFAM:SSF57850 | UniParc:UPI00000AC407 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : |
Description
At4g31450/F3L17_20 [Source:UniProtKB/TrEMBL;Acc:Q944Q9]
Coordinates
chr4:-:15255576..15258704
Molecular Weight (calculated)
55004.6 Da
IEP (calculated)
8.357
GRAVY (calculated)
-0.665
Length
497 amino acids
Sequence
(BLAST)
(BLAST)
001: MDRWSSKRAM EARPDSKKKG GVVFRDRFNS NSCKVPICSD EKKSMNFTRF VGSSDKKEKS VLSTYRSSPN GKEVIGTSSK ICISSSSSVK SGEKQPFSQI
101: AIDSSESSRG SEDEVESEIL QVPLGRDKRR MNNKLIYGKV ITPEAECSKL PSSSRIKRGF RQRFGLSKQE FHPGPSGQST SANRGCSPLL SGVIPSGFGL
201: DKRLSRKADT ISKTKVYGES SSSSSARGKN VTEPPPVEVR RRSFNPRGSV SDSRRARHCI LDDDNDVASV GSQRLANRNN SRIRGSGRDG LSSVTAAEMS
301: QTETSNNLNS PVSLELFSGF PEFGLSGSLL SHDSFRSYNL DGISEILPEL DRIEQDIELN YEDLLIMETG LLLGGLSFHD QHRDMRLDID NMSYEELLAL
401: EERIGTVSTA LTEEAISKCL KTSIYQMKPL SYGSITKSPS DNKEDAKCSI CQEEYTIGDE VGRLHCEHTY HVKCVQEWLR IKSWCPICKA TAETSSK
101: AIDSSESSRG SEDEVESEIL QVPLGRDKRR MNNKLIYGKV ITPEAECSKL PSSSRIKRGF RQRFGLSKQE FHPGPSGQST SANRGCSPLL SGVIPSGFGL
201: DKRLSRKADT ISKTKVYGES SSSSSARGKN VTEPPPVEVR RRSFNPRGSV SDSRRARHCI LDDDNDVASV GSQRLANRNN SRIRGSGRDG LSSVTAAEMS
301: QTETSNNLNS PVSLELFSGF PEFGLSGSLL SHDSFRSYNL DGISEILPEL DRIEQDIELN YEDLLIMETG LLLGGLSFHD QHRDMRLDID NMSYEELLAL
401: EERIGTVSTA LTEEAISKCL KTSIYQMKPL SYGSITKSPS DNKEDAKCSI CQEEYTIGDE VGRLHCEHTY HVKCVQEWLR IKSWCPICKA TAETSSK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.