Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra016574.1-P | Field mustard | nucleus | 75.82 | 77.93 |
| CDX96741 | Canola | nucleus | 76.63 | 77.47 |
| CDX83878 | Canola | nucleus | 73.37 | 75.63 |
| AT1G73760.1 | Thale cress | nucleus, plastid | 56.79 | 56.95 |
| TraesCS3D01G260700.1 | Wheat | nucleus | 21.47 | 39.5 |
| VIT_17s0000g03210.t01 | Wine grape | nucleus | 38.86 | 38.54 |
| KRH48568 | Soybean | nucleus | 36.41 | 37.85 |
| KRH41763 | Soybean | nucleus | 38.32 | 37.4 |
| Solyc03g118840.2.1 | Tomato | nucleus | 37.77 | 35.92 |
| PGSC0003DMT400014732 | Potato | nucleus | 37.5 | 35.57 |
| KRH39137 | Soybean | nucleus | 35.6 | 35.5 |
| PGSC0003DMT400078539 | Potato | plastid | 23.91 | 35.34 |
| GSMUA_Achr4P11130_001 | Banana | nucleus, plastid | 31.79 | 35.03 |
| Solyc12g040390.1.1 | Tomato | nucleus, plastid | 27.45 | 33.11 |
| KRH60461 | Soybean | nucleus | 38.32 | 32.71 |
| GSMUA_Achr9P21480_001 | Banana | plastid | 30.16 | 32.65 |
| TraesCS3A01G260500.1 | Wheat | nucleus | 30.16 | 32.17 |
| Solyc05g008840.1.1 | Tomato | nucleus, plastid | 19.02 | 31.82 |
| TraesCS3B01G293600.1 | Wheat | nucleus | 29.35 | 31.49 |
| VIT_01s0011g04080.t01 | Wine grape | nucleus | 29.89 | 31.34 |
| AT4G00070.1 | Thale cress | nucleus | 14.67 | 30.17 |
| OQU87370 | Sorghum | nucleus | 28.53 | 30.09 |
| Zm00001d043784_P002 | Maize | nucleus | 28.26 | 30.06 |
| Zm00001d011636_P001 | Maize | nucleus | 27.45 | 29.88 |
| GSMUA_Achr3P29390_001 | Banana | golgi, plastid | 30.71 | 29.74 |
| TraesCS1D01G380000.2 | Wheat | nucleus | 27.17 | 28.9 |
| GSMUA_Achr1P23200_001 | Banana | nucleus | 27.99 | 28.61 |
| TraesCS1B01G393400.2 | Wheat | nucleus | 26.9 | 28.45 |
| TraesCS1A01G373200.1 | Wheat | nucleus | 26.9 | 28.37 |
| HORVU3Hr1G064370.1 | Barley | plastid | 28.8 | 27.53 |
| Os05t0550000-00 | Rice | nucleus | 25.27 | 25.55 |
| Zm00001d038909_P001 | Maize | cytosol, mitochondrion | 26.36 | 25.26 |
| EES18624 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 25.27 | 24.73 |
| HORVU1Hr1G082970.1 | Barley | plastid | 24.46 | 23.87 |
| AT1G36950.1 | Thale cress | cytosol | 12.77 | 20.8 |
| AT3G47180.1 | Thale cress | cytosol | 10.33 | 18.1 |
| AT5G52155.1 | Thale cress | nucleus | 8.15 | 16.48 |
| AT3G63530.2 | Thale cress | cytosol | 10.6 | 15.73 |
| AT5G10650.2 | Thale cress | nucleus | 21.2 | 14.86 |
| AT5G52140.1 | Thale cress | nucleus | 11.14 | 14.64 |
| AT5G24870.2 | Thale cress | nucleus | 20.65 | 14.62 |
| AT5G52150.1 | Thale cress | cytosol, nucleus, peroxisome | 7.61 | 14.0 |
| AT3G15070.1 | Thale cress | nucleus | 16.58 | 12.55 |
| AT1G53190.1 | Thale cress | nucleus | 15.76 | 11.74 |
| AT1G45180.3 | Thale cress | nucleus | 20.38 | 11.63 |
| AT3G19910.1 | Thale cress | nucleus | 10.6 | 11.47 |
| AT4G34040.1 | Thale cress | nucleus | 20.38 | 11.26 |
| AT4G31450.2 | Thale cress | nucleus | 14.67 | 10.87 |
| AT5G42940.1 | Thale cress | nucleus | 19.84 | 10.56 |
| AT2G37150.3 | Thale cress | endoplasmic reticulum, extracellular | 16.58 | 10.18 |
| AT2G15530.4 | Thale cress | nucleus | 20.92 | 9.87 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | EntrezGene:838377 | ProteinID:AEE29657.1 | EMBL:AF428290 | ArrayExpress:AT1G17970 |
| EnsemblPlantsGene:AT1G17970 | RefSeq:AT1G17970 | TAIR:AT1G17970 | RefSeq:AT1G17970-TAIR-G | EnsemblPlants:AT1G17970.1 | TAIR:AT1G17970.1 |
| EMBL:AY116963 | InterPro:IPR001841 | InterPro:IPR013083 | RefSeq:NP_173239.1 | PFAM:PF13639 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PFscan:PS50089 | PANTHER:PTHR22937 | PANTHER:PTHR22937:SF98 |
| UniProt:Q944L9 | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI00000AB3E5 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD |
| SEG:seg | : | : | : | : | : |
Description
At1g17970/F2H15_16 [Source:UniProtKB/TrEMBL;Acc:Q944L9]
Coordinates
chr1:+:6184717..6187473
Molecular Weight (calculated)
41620.3 Da
IEP (calculated)
9.568
GRAVY (calculated)
-0.739
Length
368 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSTTIGEHI RLRRARNQTI RHLHAADDDP PLSHVVLPIS QPNRFCNSAM SSFFPLPTSS SNESTRKKPY QTSSFRGMGC YAAAAAAAQE VSVPSVIRYS
101: ADLDARIRKD KKKKKHKHKK KKKKNKGSYE DGSIRILSEE ARDVIDVWCR PGLGFSTDAV IGRSVDPPRG RNIPSSRRKI DVDNNNYNHT LGSSVLPIRF
201: LNQETHSHDI FNSDSTFVTS SRAEPTMLSS RCRGHLPRSY PDDLTEMRML QNGFVMGRIT DSRDNYHELR LDVDSMSYEQ LLELGDRIGY VNTGLKESEI
301: HRCLGKIKPS VSHTLVDRKC SICQDEYERE DEVGELNCGH SFHVHCVKQW LSRKNACPVC KKAAYGKP
101: ADLDARIRKD KKKKKHKHKK KKKKNKGSYE DGSIRILSEE ARDVIDVWCR PGLGFSTDAV IGRSVDPPRG RNIPSSRRKI DVDNNNYNHT LGSSVLPIRF
201: LNQETHSHDI FNSDSTFVTS SRAEPTMLSS RCRGHLPRSY PDDLTEMRML QNGFVMGRIT DSRDNYHELR LDVDSMSYEQ LLELGDRIGY VNTGLKESEI
301: HRCLGKIKPS VSHTLVDRKC SICQDEYERE DEVGELNCGH SFHVHCVKQW LSRKNACPVC KKAAYGKP
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.