Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- plastid 2
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g118840.2.1 | Tomato | nucleus | 97.16 | 97.42 |
| VIT_17s0000g03210.t01 | Wine grape | nucleus | 54.38 | 56.87 |
| PGSC0003DMT400079217 | Potato | cytosol | 13.4 | 52.53 |
| TraesCS3D01G260700.1 | Wheat | nucleus | 24.74 | 48.0 |
| KRH41763 | Soybean | nucleus | 46.39 | 47.75 |
| KRH48568 | Soybean | nucleus | 41.75 | 45.76 |
| KRH39137 | Soybean | nucleus | 41.49 | 43.63 |
| OQU87370 | Sorghum | nucleus | 39.18 | 43.55 |
| TraesCS3A01G260500.1 | Wheat | nucleus | 38.4 | 43.19 |
| Zm00001d043784_P002 | Maize | nucleus | 38.4 | 43.06 |
| AT1G73760.1 | Thale cress | nucleus, plastid | 40.46 | 42.78 |
| VIT_01s0011g04080.t01 | Wine grape | nucleus | 38.66 | 42.73 |
| Zm00001d011636_P001 | Maize | nucleus | 37.11 | 42.6 |
| Bra015967.1-P | Field mustard | nucleus | 39.18 | 42.58 |
| CDY60141 | Canola | plastid | 39.18 | 42.58 |
| TraesCS3B01G293600.1 | Wheat | nucleus | 37.63 | 42.57 |
| CDX73013 | Canola | plastid | 38.92 | 42.54 |
| Bra003830.1-P | Field mustard | nucleus, plastid | 36.86 | 42.18 |
| CDY11092 | Canola | cytosol, plastid | 37.63 | 41.95 |
| KRH60461 | Soybean | nucleus | 46.13 | 41.53 |
| CDX68213 | Canola | nucleus, plastid | 36.6 | 40.69 |
| CDX83878 | Canola | nucleus | 36.86 | 40.06 |
| PGSC0003DMT400078539 | Potato | plastid | 25.52 | 39.76 |
| Bra016574.1-P | Field mustard | nucleus | 36.34 | 39.39 |
| GSMUA_Achr4P11130_001 | Banana | nucleus, plastid | 33.76 | 39.22 |
| CDX96741 | Canola | nucleus | 36.6 | 39.01 |
| GSMUA_Achr9P21480_001 | Banana | plastid | 33.25 | 37.94 |
| AT1G17970.1 | Thale cress | nucleus | 35.57 | 37.5 |
| HORVU3Hr1G064370.1 | Barley | plastid | 37.11 | 37.4 |
| GSMUA_Achr3P29390_001 | Banana | golgi, plastid | 35.82 | 36.58 |
| TraesCS1B01G393400.2 | Wheat | nucleus | 32.22 | 35.92 |
| TraesCS1D01G380000.2 | Wheat | nucleus | 31.7 | 35.55 |
| TraesCS1A01G373200.1 | Wheat | nucleus | 31.96 | 35.53 |
| GSMUA_Achr1P23200_001 | Banana | nucleus | 32.22 | 34.72 |
| Os05t0550000-00 | Rice | nucleus | 32.22 | 34.34 |
| Zm00001d038909_P001 | Maize | cytosol, mitochondrion | 32.47 | 32.81 |
| EES18624 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 31.7 | 32.71 |
| HORVU1Hr1G082970.1 | Barley | plastid | 29.12 | 29.97 |
| AT4G00070.1 | Thale cress | nucleus | 12.11 | 26.26 |
| PGSC0003DMT400020398 | Potato | nucleus | 10.31 | 22.6 |
| PGSC0003DMT400082375 | Potato | nucleus | 12.89 | 20.33 |
| AT1G36950.1 | Thale cress | cytosol | 10.31 | 17.7 |
| PGSC0003DMT400017553 | Potato | nucleus | 11.08 | 17.7 |
| PGSC0003DMT400037132 | Potato | nucleus | 10.82 | 17.57 |
| PGSC0003DMT400067670 | Potato | nucleus | 22.16 | 16.29 |
| PGSC0003DMT400095772 | Potato | cytosol | 7.47 | 15.59 |
| PGSC0003DMT400075959 | Potato | nucleus | 21.39 | 15.23 |
| PGSC0003DMT400004449 | Potato | nucleus | 19.07 | 13.65 |
| PGSC0003DMT400039849 | Potato | nucleus | 23.45 | 13.13 |
| PGSC0003DMT400039631 | Potato | nucleus | 17.78 | 12.87 |
| PGSC0003DMT400054921 | Potato | nucleus | 17.01 | 12.72 |
| PGSC0003DMT400066252 | Potato | nucleus | 22.42 | 12.17 |
| PGSC0003DMT400020528 | Potato | nucleus | 20.62 | 11.61 |
| PGSC0003DMT400032385 | Potato | nucleus | 16.24 | 7.76 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400014732 | EnsemblPlantsGene:PGSC0003DMG400005742 | EntrezGene:102601442 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR22937 | PANTHER:PTHR22937:SF98 | PFAM:PF13639 | PFscan:PS50089 |
| PGSC:PGSC0003DMG400005742 | RefSeq:XP_006341541.1 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI00029587B2 |
| UniProt:M1A4S6 | MapMan:35.1 | : | : | : | : |
Description
Ring finger containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400005742]
Coordinates
chr3:+:58352392..58355810
Molecular Weight (calculated)
42728.3 Da
IEP (calculated)
8.597
GRAVY (calculated)
-0.563
Length
388 amino acids
Sequence
(BLAST)
(BLAST)
001: MPVVFSESST VSEQIRYRKP RTQNQQETQD MDPISSSSSS RSTKPTISSL LLAPFSPTSP THENSTTPTA STVFSTKKKN FATFRGLGCT ASPQVSVPAV
101: IRTSADWDPK RVKKKKQNSN KNKSLTSAVN VGGGVSIGCS NSLQNNNPSS SSSSSAPLSL SSSCVAVPDV WCGPGIGLTT DAASVDCVVS RRPVSGRGRI
201: ESDKATPRER SACPIRRMVS PEDNPFLDIE SSLGIPRSQI ELFASRHHRH SRHGYSEGLA EIVMLQNSLM GGRTDGLDRY RNWRLDVDNM SYEELLELGD
301: KIGYVNTGLR EDEIARCVRR TKPFFLSNLS LIRTELERQC TICQEEYEAE DEMGKLDCGH FYHIRCIKQW LSQKNSCPVC KSAAMSNS
101: IRTSADWDPK RVKKKKQNSN KNKSLTSAVN VGGGVSIGCS NSLQNNNPSS SSSSSAPLSL SSSCVAVPDV WCGPGIGLTT DAASVDCVVS RRPVSGRGRI
201: ESDKATPRER SACPIRRMVS PEDNPFLDIE SSLGIPRSQI ELFASRHHRH SRHGYSEGLA EIVMLQNSLM GGRTDGLDRY RNWRLDVDNM SYEELLELGD
301: KIGYVNTGLR EDEIARCVRR TKPFFLSNLS LIRTELERQC TICQEEYEAE DEMGKLDCGH FYHIRCIKQW LSQKNSCPVC KSAAMSNS
001: MPVSAEPSSS SSTTIGQHMR LQRPRNHRNL PPISTADEPL IPKPSRVSKS AMSSFFLLPE TTKKKPNGTA SFRGLGCTTS ASQQVSVPAV IRSSADWDAS
101: NFKIKKTKKK NKNKGSSSYN GGSIKILSEA STSSSVACAA IPDVWCGPGV GFSTDAVVGG SIDTVVSDPP RRNIPVRRKI DGDKTNSNSN NHREGSSSLL
201: PRRSLNQESN PYFDSDSSFL TSRAEQTDRY HRHLRLPYPD GLAEMMMMQN GFVMGGVLSS FDQFRDMRLN VDNMTYEQLL ELGERIGHVN TGLTEKQIKS
301: CLRKVKPCRQ DTTVADRKCI ICQDEYEAKD EVGELRCGHR FHIDCVNQWL VRKNSCPVCK TMAYNKS
101: NFKIKKTKKK NKNKGSSSYN GGSIKILSEA STSSSVACAA IPDVWCGPGV GFSTDAVVGG SIDTVVSDPP RRNIPVRRKI DGDKTNSNSN NHREGSSSLL
201: PRRSLNQESN PYFDSDSSFL TSRAEQTDRY HRHLRLPYPD GLAEMMMMQN GFVMGGVLSS FDQFRDMRLN VDNMTYEQLL ELGERIGHVN TGLTEKQIKS
301: CLRKVKPCRQ DTTVADRKCI ICQDEYEAKD EVGELRCGHR FHIDCVNQWL VRKNSCPVCK TMAYNKS
Arabidopsis Description
Putative RING zinc finger protein; 69105-67310 [Source:UniProtKB/TrEMBL;Acc:Q9C9T6]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.