Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc11g062260.1.1 | Tomato | nucleus | 95.94 | 95.94 |
| VIT_06s0004g01930.t01 | Wine grape | nucleus | 61.79 | 60.32 |
| GSMUA_Achr4P03550_001 | Banana | mitochondrion | 14.23 | 58.33 |
| KRH24699 | Soybean | nucleus | 58.13 | 57.66 |
| KRH29702 | Soybean | nucleus | 57.72 | 57.26 |
| Os03t0173900-01 | Rice | nucleus | 50.81 | 50.0 |
| KXG40075 | Sorghum | cytosol | 50.0 | 49.4 |
| TraesCS4A01G112900.1 | Wheat | nucleus | 49.59 | 48.8 |
| GSMUA_Achr4P13930_001 | Banana | nucleus | 47.97 | 47.58 |
| TraesCS4B01G191300.1 | Wheat | nucleus | 50.0 | 46.95 |
| GSMUA_Achr8P31290_001 | Banana | nucleus | 46.75 | 45.45 |
| GSMUA_Achr4P03540_001 | Banana | nucleus | 35.37 | 44.16 |
| Zm00001d027868_P004 | Maize | cytosol | 48.37 | 44.07 |
| TraesCS4D01G192500.2 | Wheat | cytosol, nucleus, vacuole | 48.37 | 44.07 |
| Zm00001d048301_P001 | Maize | cytosol | 43.09 | 43.98 |
| PGSC0003DMT400017553 | Potato | nucleus | 43.09 | 43.62 |
| PGSC0003DMT400079217 | Potato | cytosol | 14.23 | 35.35 |
| HORVU4Hr1G055690.5 | Barley | peroxisome, plastid | 50.0 | 34.94 |
| PGSC0003DMT400037132 | Potato | nucleus | 32.11 | 33.05 |
| PGSC0003DMT400020398 | Potato | nucleus | 21.14 | 29.38 |
| PGSC0003DMT400078539 | Potato | plastid | 16.26 | 16.06 |
| PGSC0003DMT400014732 | Potato | nucleus | 20.33 | 12.89 |
| PGSC0003DMT400054921 | Potato | nucleus | 23.58 | 11.18 |
| PGSC0003DMT400004449 | Potato | nucleus | 23.17 | 10.52 |
| PGSC0003DMT400039631 | Potato | nucleus | 22.76 | 10.45 |
| PGSC0003DMT400095772 | Potato | cytosol | 7.72 | 10.22 |
| PGSC0003DMT400067670 | Potato | nucleus | 18.7 | 8.71 |
| PGSC0003DMT400039849 | Potato | nucleus | 22.76 | 8.08 |
| PGSC0003DMT400075959 | Potato | nucleus | 17.89 | 8.07 |
| PGSC0003DMT400066252 | Potato | nucleus | 19.92 | 6.85 |
| PGSC0003DMT400032385 | Potato | nucleus | 21.14 | 6.4 |
| PGSC0003DMT400020528 | Potato | nucleus | 17.48 | 6.24 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400082375 | EnsemblPlantsGene:PGSC0003DMG400032503 | EntrezGene:102597766 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR14155 | PANTHER:PTHR14155:SF170 | PFAM:PF13639 | PFscan:PS50089 |
| PGSC:PGSC0003DMG400032503 | RefSeq:XP_006356379.1 | RefSeq:XP_006356380.1 | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI000295B8ED |
| UniProt:M1D5T9 | MapMan:35.1 | : | : | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400032503]
Coordinates
chr11:-:35108582..35115715
Molecular Weight (calculated)
28059.5 Da
IEP (calculated)
5.801
GRAVY (calculated)
-0.632
Length
246 amino acids
Sequence
(BLAST)
(BLAST)
001: MNWNQQTEIY YTNGAVPYNS IGSFMDFFGG VTYDHVNYIF ADPPYAQESL YPSISTNPYK FGYSEAGSFS YYDYDHEYVV NDHVSGIEEH DRHLENPSTA
101: TVNVAANVHR EEISGSNSLT NSVECPRGQI NTRDSEVVWH DSIDPDNMTY EELLELGEAV GTQSRGLSQD QISSLPVTKF KCGFFSRKKS RKERCVICQM
201: EYKRKDRQVT LPCKHVYHSG CGSRWLSINK ACPICYSEVV INTSKR
101: TVNVAANVHR EEISGSNSLT NSVECPRGQI NTRDSEVVWH DSIDPDNMTY EELLELGEAV GTQSRGLSQD QISSLPVTKF KCGFFSRKKS RKERCVICQM
201: EYKRKDRQVT LPCKHVYHSG CGSRWLSINK ACPICYSEVV INTSKR
001: MNGDNRPVED AHYTETGFPY AATGSYMDFY GGAAQGPLNY DHAATMHPQD NLYWTMNTNA YKFGFSGSDN ASFYGSYDMN DHLSRMSIGR TNWDYHPMVN
101: VADDPENTVA RSVQIGDTDE HSEAEECIAN EHDPDSPQVS WQDDIDPDTM TYEELVELGE AVGTESRGLS QELIETLPTK KYKFGSIFSR KRAGERCVIC
201: QLKYKIGERQ MNLPCKHVYH SECISKWLSI NKVCPVCNSE VFGEPSIH
101: VADDPENTVA RSVQIGDTDE HSEAEECIAN EHDPDSPQVS WQDDIDPDTM TYEELVELGE AVGTESRGLS QELIETLPTK KYKFGSIFSR KRAGERCVIC
201: QLKYKIGERQ MNLPCKHVYH SECISKWLSI NKVCPVCNSE VFGEPSIH
Arabidopsis Description
BBBB2 [Source:UniProtKB/TrEMBL;Acc:A0A178VG02]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.