Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P03540_001 | Banana | nucleus | 60.08 | 75.63 |
| GSMUA_Achr4P03550_001 | Banana | mitochondrion | 15.32 | 63.33 |
| GSMUA_Achr8P31290_001 | Banana | nucleus | 64.52 | 63.24 |
| VIT_06s0004g01930.t01 | Wine grape | nucleus | 49.19 | 48.41 |
| KRH29702 | Soybean | nucleus | 47.98 | 47.98 |
| KRH24699 | Soybean | nucleus | 47.98 | 47.98 |
| PGSC0003DMT400082375 | Potato | nucleus | 47.58 | 47.97 |
| Solyc11g062260.1.1 | Tomato | nucleus | 46.77 | 47.15 |
| GSMUA_AchrUn_... | Banana | nucleus | 15.73 | 34.82 |
| GSMUA_Achr3P26700_001 | Banana | nucleus | 32.26 | 27.4 |
| GSMUA_Achr4P05140_001 | Banana | nucleus | 32.66 | 27.36 |
| GSMUA_Achr4P06090_001 | Banana | cytosol | 16.13 | 27.21 |
| GSMUA_Achr4P04290_001 | Banana | nucleus | 21.77 | 24.32 |
| GSMUA_Achr9P24150_001 | Banana | nucleus | 28.23 | 23.26 |
| GSMUA_Achr4P04180_001 | Banana | mitochondrion, nucleus, peroxisome, plastid | 28.63 | 23.13 |
| GSMUA_Achr4P30500_001 | Banana | nucleus | 30.65 | 22.42 |
| GSMUA_AchrUn_... | Banana | nucleus | 18.55 | 20.44 |
| GSMUA_Achr4P11130_001 | Banana | nucleus, plastid | 19.35 | 14.37 |
| GSMUA_Achr9P21480_001 | Banana | plastid | 18.95 | 13.82 |
| GSMUA_Achr1P23200_001 | Banana | nucleus | 18.15 | 12.5 |
| GSMUA_Achr3P29390_001 | Banana | golgi, plastid | 18.55 | 12.11 |
| GSMUA_Achr6P03840_001 | Banana | nucleus | 16.53 | 11.05 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, peroxisome | 22.18 | 10.74 |
| GSMUA_Achr1P23500_001 | Banana | nucleus | 21.37 | 10.31 |
| GSMUA_Achr3P13740_001 | Banana | nucleus | 19.76 | 10.0 |
| GSMUA_Achr5P08460_001 | Banana | nucleus | 22.98 | 9.93 |
| GSMUA_Achr4P12850_001 | Banana | nucleus | 18.15 | 9.87 |
| GSMUA_Achr10P... | Banana | nucleus | 18.55 | 9.09 |
| GSMUA_Achr3P05160_001 | Banana | nucleus | 20.56 | 8.66 |
| GSMUA_Achr9P11290_001 | Banana | nucleus | 23.79 | 8.46 |
| GSMUA_Achr7P15850_001 | Banana | nucleus | 20.16 | 7.69 |
| GSMUA_Achr9P22530_001 | Banana | nucleus | 18.95 | 7.3 |
| GSMUA_Achr8P15680_001 | Banana | nucleus | 20.56 | 7.08 |
| GSMUA_Achr4P06080_001 | Banana | nucleus | 12.9 | 6.91 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr4P13930_001 | EnsemblPlants:GSMUA_Achr4T13930_001 | EnsemblPlantsGene:GSMUA_Achr4G13930_001 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR14155 | PANTHER:PTHR14155:SF170 | PFAM:PF13639 | PFscan:PS50089 |
| SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI000294C23D | UniProt:M0SNQ8 | MapMan:35.1 |
Description
Putative E3 ubiquitin ligase BIG BROTHER [Source:GMGC_GENE;Acc:GSMUA_Achr4G13930_001]
Coordinates
chr4:-:10415588..10420655
Molecular Weight (calculated)
28498.4 Da
IEP (calculated)
6.154
GRAVY (calculated)
-0.656
Length
248 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGNRQMEVH YINTGFPYTV TESLMDLFEG LTYAQADAVL AEAIHDQGNT YWSTMHPYKY GFSGSSNNSY YDFGHTFDIY DYTQRLDGGR RAWDNPAALN
101: NLGLPQQTQQ SNEFAHANRT PRTEECIQVQ QNVSGSQVIW QDNVDPDNMT YEELLELGET VGTQSRGLTQ ECIASLPVTK YKCSFFSRKK SQRERCVICQ
201: KEYKRGDRQI ILPCKHVYHS TCVTRWLGIK KVCPICLAEV RCEEPKLQ
101: NLGLPQQTQQ SNEFAHANRT PRTEECIQVQ QNVSGSQVIW QDNVDPDNMT YEELLELGET VGTQSRGLTQ ECIASLPVTK YKCSFFSRKK SQRERCVICQ
201: KEYKRGDRQI ILPCKHVYHS TCVTRWLGIK KVCPICLAEV RCEEPKLQ
001: MNGDNRPVED AHYTETGFPY AATGSYMDFY GGAAQGPLNY DHAATMHPQD NLYWTMNTNA YKFGFSGSDN ASFYGSYDMN DHLSRMSIGR TNWDYHPMVN
101: VADDPENTVA RSVQIGDTDE HSEAEECIAN EHDPDSPQVS WQDDIDPDTM TYEELVELGE AVGTESRGLS QELIETLPTK KYKFGSIFSR KRAGERCVIC
201: QLKYKIGERQ MNLPCKHVYH SECISKWLSI NKVCPVCNSE VFGEPSIH
101: VADDPENTVA RSVQIGDTDE HSEAEECIAN EHDPDSPQVS WQDDIDPDTM TYEELVELGE AVGTESRGLS QELIETLPTK KYKFGSIFSR KRAGERCVIC
201: QLKYKIGERQ MNLPCKHVYH SECISKWLSI NKVCPVCNSE VFGEPSIH
Arabidopsis Description
BBBB2 [Source:UniProtKB/TrEMBL;Acc:A0A178VG02]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.