Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G260700.1 | Wheat | nucleus | 30.56 | 55.0 |
| GSMUA_Achr9P21480_001 | Banana | plastid | 45.28 | 47.94 |
| GSMUA_Achr4P11130_001 | Banana | nucleus, plastid | 44.44 | 47.9 |
| TraesCS3A01G260500.1 | Wheat | nucleus | 45.0 | 46.96 |
| TraesCS3B01G293600.1 | Wheat | nucleus | 44.17 | 46.36 |
| Zm00001d011636_P001 | Maize | nucleus | 42.78 | 45.56 |
| OQU87370 | Sorghum | nucleus | 43.89 | 45.27 |
| Zm00001d043784_P002 | Maize | nucleus | 43.06 | 44.8 |
| GSMUA_Achr3P29390_001 | Banana | golgi, plastid | 45.28 | 42.89 |
| GSMUA_Achr4P06090_001 | Banana | cytosol | 17.22 | 42.18 |
| GSMUA_AchrUn_... | Banana | nucleus | 12.78 | 41.07 |
| HORVU3Hr1G064370.1 | Barley | plastid | 43.89 | 41.04 |
| TraesCS1B01G393400.2 | Wheat | nucleus | 36.39 | 37.64 |
| TraesCS1A01G373200.1 | Wheat | nucleus | 36.39 | 37.54 |
| Os05t0550000-00 | Rice | nucleus | 37.5 | 37.09 |
| TraesCS1D01G380000.2 | Wheat | nucleus | 35.56 | 36.99 |
| EES18624 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 38.06 | 36.44 |
| Zm00001d038909_P001 | Maize | cytosol, mitochondrion | 38.33 | 35.94 |
| VIT_17s0000g03210.t01 | Wine grape | nucleus | 36.94 | 35.85 |
| KRH48568 | Soybean | nucleus | 34.44 | 35.03 |
| Solyc12g040390.1.1 | Tomato | nucleus, plastid | 29.44 | 34.75 |
| HORVU1Hr1G082970.1 | Barley | plastid | 35.28 | 33.69 |
| KRH39137 | Soybean | nucleus | 33.89 | 33.06 |
| Solyc03g118840.2.1 | Tomato | nucleus | 35.0 | 32.56 |
| PGSC0003DMT400014732 | Potato | nucleus | 34.72 | 32.22 |
| PGSC0003DMT400078539 | Potato | plastid | 22.22 | 32.13 |
| KRH41763 | Soybean | nucleus | 33.33 | 31.83 |
| GSMUA_Achr4P03550_001 | Banana | mitochondrion | 5.28 | 31.67 |
| Bra003830.1-P | Field mustard | nucleus, plastid | 29.72 | 31.56 |
| CDX73013 | Canola | plastid | 31.11 | 31.55 |
| CDY60141 | Canola | plastid | 30.56 | 30.81 |
| Bra015967.1-P | Field mustard | nucleus | 30.56 | 30.81 |
| AT1G73760.1 | Thale cress | nucleus, plastid | 31.39 | 30.79 |
| CDY11092 | Canola | cytosol, plastid | 29.44 | 30.46 |
| CDX68213 | Canola | nucleus, plastid | 29.17 | 30.09 |
| VIT_01s0011g04080.t01 | Wine grape | nucleus | 28.61 | 29.34 |
| Bra016574.1-P | Field mustard | nucleus | 28.89 | 29.05 |
| CDX96741 | Canola | nucleus | 29.17 | 28.85 |
| CDX83878 | Canola | nucleus | 28.06 | 28.29 |
| AT1G17970.1 | Thale cress | nucleus | 28.61 | 27.99 |
| KRH60461 | Soybean | nucleus | 33.33 | 27.84 |
| GSMUA_AchrUn_... | Banana | nucleus | 16.11 | 25.78 |
| Solyc05g008840.1.1 | Tomato | nucleus, plastid | 15.28 | 25.0 |
| AT4G00070.1 | Thale cress | nucleus | 10.83 | 21.79 |
| GSMUA_Achr8P31290_001 | Banana | nucleus | 13.33 | 18.97 |
| GSMUA_Achr4P13930_001 | Banana | nucleus | 12.5 | 18.15 |
| GSMUA_Achr6P03840_001 | Banana | nucleus | 17.5 | 16.98 |
| GSMUA_Achr3P13740_001 | Banana | nucleus | 21.94 | 16.12 |
| GSMUA_Achr4P04290_001 | Banana | nucleus | 9.44 | 15.32 |
| GSMUA_Achr10P... | Banana | nucleus | 20.83 | 14.82 |
| GSMUA_Achr4P12850_001 | Banana | nucleus | 18.61 | 14.69 |
| GSMUA_Achr4P05140_001 | Banana | nucleus | 11.94 | 14.53 |
| GSMUA_Achr3P26700_001 | Banana | nucleus | 11.67 | 14.38 |
| GSMUA_Achr1P23500_001 | Banana | nucleus | 20.28 | 14.2 |
| AT1G36950.1 | Thale cress | cytosol | 8.89 | 14.16 |
| GSMUA_Achr4P03540_001 | Banana | nucleus | 7.5 | 13.71 |
| GSMUA_Achr9P24150_001 | Banana | nucleus | 11.39 | 13.62 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, peroxisome | 19.17 | 13.48 |
| GSMUA_Achr3P05160_001 | Banana | nucleus | 21.11 | 12.9 |
| GSMUA_Achr4P30500_001 | Banana | nucleus | 11.11 | 11.8 |
| GSMUA_Achr9P11290_001 | Banana | nucleus | 22.78 | 11.76 |
| GSMUA_Achr9P22530_001 | Banana | nucleus | 20.83 | 11.65 |
| GSMUA_Achr7P15850_001 | Banana | nucleus | 20.83 | 11.54 |
| GSMUA_Achr4P04180_001 | Banana | mitochondrion, nucleus, peroxisome, plastid | 9.72 | 11.4 |
| GSMUA_Achr5P08460_001 | Banana | nucleus | 18.06 | 11.32 |
| GSMUA_Achr8P15680_001 | Banana | nucleus | 21.11 | 10.56 |
| GSMUA_Achr4P06080_001 | Banana | nucleus | 13.33 | 10.37 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr1P23200_001 | EnsemblPlants:GSMUA_Achr1T23200_001 | EnsemblPlantsGene:GSMUA_Achr1G23200_001 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR22937 | PANTHER:PTHR22937:SF63 | PFAM:PF13639 | PFscan:PS50089 |
| SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI0002952CAA | UniProt:M0S2C8 | MapMan:35.1 |
Description
zinc finger, C3HC4 type domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr1G23200_001]
Coordinates
chr1:-:17429015..17432518
Molecular Weight (calculated)
41104.5 Da
IEP (calculated)
6.647
GRAVY (calculated)
-0.542
Length
360 amino acids
Sequence
(BLAST)
(BLAST)
001: MFRNFLKDER SVEDFEKFFF REFARNLFIS NSLFSYPFPF HGLRQRRLAV TGPPQPPPPP PQLLEAIPRR PEPSDLFPAA HGQEEGGAFR VGGASEEASQ
101: AYAPAAASAR SYSDWQRNRP RGKAKRKEER RSRDGGDVWC APRVPFASEA SVDCVVSYRR LAGSGRPDAA DRTHSEVVNL SSVLLISIHQ EHTSAFMDSS
201: LELDAPLFGH DLLSSGHLHN LPMYRQTPSR LEEILMFQRR ILLGRMDLYD QYRDWQLNVD NMSYEELLEL GDRIGHVSTG LKEEEIIGSL RKVKHSFFYA
301: LKRFFSTEID GKCSICQEEY EANDEIGELD CGHSYHVFCI KQWLLQNNVC PVSKTSVPRT
101: AYAPAAASAR SYSDWQRNRP RGKAKRKEER RSRDGGDVWC APRVPFASEA SVDCVVSYRR LAGSGRPDAA DRTHSEVVNL SSVLLISIHQ EHTSAFMDSS
201: LELDAPLFGH DLLSSGHLHN LPMYRQTPSR LEEILMFQRR ILLGRMDLYD QYRDWQLNVD NMSYEELLEL GDRIGHVSTG LKEEEIIGSL RKVKHSFFYA
301: LKRFFSTEID GKCSICQEEY EANDEIGELD CGHSYHVFCI KQWLLQNNVC PVSKTSVPRT
001: MPVSAEPSSS SSTTIGQHMR LQRPRNHRNL PPISTADEPL IPKPSRVSKS AMSSFFLLPE TTKKKPNGTA SFRGLGCTTS ASQQVSVPAV IRSSADWDAS
101: NFKIKKTKKK NKNKGSSSYN GGSIKILSEA STSSSVACAA IPDVWCGPGV GFSTDAVVGG SIDTVVSDPP RRNIPVRRKI DGDKTNSNSN NHREGSSSLL
201: PRRSLNQESN PYFDSDSSFL TSRAEQTDRY HRHLRLPYPD GLAEMMMMQN GFVMGGVLSS FDQFRDMRLN VDNMTYEQLL ELGERIGHVN TGLTEKQIKS
301: CLRKVKPCRQ DTTVADRKCI ICQDEYEAKD EVGELRCGHR FHIDCVNQWL VRKNSCPVCK TMAYNKS
101: NFKIKKTKKK NKNKGSSSYN GGSIKILSEA STSSSVACAA IPDVWCGPGV GFSTDAVVGG SIDTVVSDPP RRNIPVRRKI DGDKTNSNSN NHREGSSSLL
201: PRRSLNQESN PYFDSDSSFL TSRAEQTDRY HRHLRLPYPD GLAEMMMMQN GFVMGGVLSS FDQFRDMRLN VDNMTYEQLL ELGERIGHVN TGLTEKQIKS
301: CLRKVKPCRQ DTTVADRKCI ICQDEYEAKD EVGELRCGHR FHIDCVNQWL VRKNSCPVCK TMAYNKS
Arabidopsis Description
Putative RING zinc finger protein; 69105-67310 [Source:UniProtKB/TrEMBL;Acc:Q9C9T6]
SUBAcon: [nucleus,plastid]
SUBAcon: [nucleus,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.