Factsheet for VIT_01s0011g04080.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
nucleus 4
mitochondrion 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_07s0031g00400.t01	Wine grape	cytoskeleton, cytosol, nucleus	14.53	50.0
VIT_17s0000g03210.t01	Wine grape	nucleus	48.15	45.55
TraesCS3D01G260700.1	Wheat	nucleus	25.93	45.5
VIT_11s0118g00640.t01	Wine grape	nucleus	15.1	44.54
VIT_07s0031g00380.t01	Wine grape	cytosol	8.55	42.86
VIT_16s0022g00290.t01	Wine grape	nucleus	9.12	42.11
PGSC0003DMT400078539	Potato	plastid	29.34	41.37
VIT_07s0031g00370.t01	Wine grape	mitochondrion	16.52	40.0
Solyc03g118840.2.1	Tomato	nucleus	42.73	38.76
PGSC0003DMT400014732	Potato	nucleus	42.73	38.66
Solyc05g008840.1.1	Tomato	nucleus, plastid	23.93	38.18
TraesCS3B01G293600.1	Wheat	nucleus	37.04	37.9
Zm00001d011636_P001	Maize	nucleus	35.9	37.28
KRH41763	Soybean	nucleus	39.89	37.14
TraesCS3A01G260500.1	Wheat	nucleus	36.47	37.1
OQU87370	Sorghum	nucleus	36.47	36.68
Zm00001d043784_P002	Maize	nucleus	35.9	36.42
KRH48568	Soybean	nucleus	36.18	35.88
GSMUA_Achr9P21480_001	Banana	plastid	34.47	35.59
GSMUA_Achr4P11130_001	Banana	nucleus, plastid	33.62	35.33
Solyc12g040390.1.1	Tomato	nucleus, plastid	29.91	34.43
KRH39137	Soybean	nucleus	35.61	33.88
CDX83878	Canola	nucleus	33.9	33.33
CDX73013	Canola	plastid	33.62	33.24
CDY60141	Canola	plastid	33.62	33.05
Bra015967.1-P	Field mustard	nucleus	33.62	33.05
HORVU3Hr1G064370.1	Barley	plastid	36.18	32.99
CDX68213	Canola	nucleus, plastid	32.76	32.95
CDY11092	Canola	cytosol, plastid	32.48	32.76
KRH60461	Soybean	nucleus	40.17	32.71
AT1G73760.1	Thale cress	nucleus, plastid	34.19	32.7
Bra003830.1-P	Field mustard	nucleus, plastid	31.34	32.45
TraesCS1D01G380000.2	Wheat	nucleus	31.91	32.37
TraesCS1B01G393400.2	Wheat	nucleus	31.91	32.18
TraesCS1A01G373200.1	Wheat	nucleus	31.91	32.09
GSMUA_Achr3P29390_001	Banana	golgi, plastid	33.9	31.32
Os05t0550000-00	Rice	nucleus	31.91	30.77
Bra016574.1-P	Field mustard	nucleus	31.34	30.73
CDX96741	Canola	nucleus	31.62	30.49
EES18624	Sorghum	cytosol, mitochondrion, nucleus, plastid	32.48	30.32
Zm00001d038909_P001	Maize	cytosol, mitochondrion	33.05	30.21
AT1G17970.1	Thale cress	nucleus	31.34	29.89
VIT_07s0031g00440.t01	Wine grape	nucleus	17.95	28.64
GSMUA_Achr1P23200_001	Banana	nucleus	29.34	28.61
HORVU1Hr1G082970.1	Barley	plastid	29.91	27.85
AT4G00070.1	Thale cress	nucleus	13.11	25.7
VIT_07s0031g00390.t01	Wine grape	nucleus	14.81	21.31
VIT_18s0001g02280.t01	Wine grape	nucleus	11.68	19.81
VIT_06s0004g01930.t01	Wine grape	nucleus	13.68	19.05
VIT_12s0028g01220.t01	Wine grape	nucleus	11.68	18.72
AT1G36950.1	Thale cress	cytosol	11.11	17.26
VIT_13s0064g01030.t01	Wine grape	nucleus	11.97	17.0
VIT_19s0014g01850.t01	Wine grape	nucleus	22.51	14.68
VIT_08s0040g02160.t01	Wine grape	nucleus	22.51	14.47
VIT_04s0008g02390.t01	Wine grape	nucleus	21.65	13.82
VIT_13s0019g04100.t01	Wine grape	extracellular	22.22	13.81
VIT_03s0088g00930.t01	Wine grape	nucleus, plastid	15.38	13.74
VIT_03s0097g00680.t01	Wine grape	nucleus	15.67	13.06
VIT_10s0042g00580.t01	Wine grape	nucleus	11.4	12.99
VIT_03s0088g01090.t01	Wine grape	nucleus	16.24	12.47
VIT_18s0001g10260.t01	Wine grape	nucleus	23.36	11.17
VIT_03s0063g00160.t01	Wine grape	nucleus	23.08	11.04

Protein Annotations

EntrezGene:100252628	wikigene:100252628	Gene3D:3.30.40.10	MapMan:35.1	ProteinID:CCB50881	ProteinID:CCB50881.1
UniProt:F6HEV5	EMBL:FN595752	InterPro:IPR001841	InterPro:IPR013083	EntrezGene:LOC100252628	wikigene:LOC100252628
PFAM:PF13639	PFscan:PS50089	PANTHER:PTHR22937	PANTHER:PTHR22937:SF96	SMART:SM00184	SUPFAM:SSF57850
TIGR:TC67170	UniParc:UPI0001982935	ArrayExpress:VIT_01s0011g04080	EnsemblPlantsGene:VIT_01s0011g04080	EnsemblPlants:VIT_01s0011g04080.t01	unigene:Vvi.15181
RefSeq:XP_002282898	RefSeq:XP_002282898.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

No Description!

Coordinates

chr1:+:3727811..3730410

Molecular Weight (calculated)

38667.9 Da

IEP (calculated)

9.733

GRAVY (calculated)

-0.567

Length

351 amino acids

Sequence
(BLAST)

001: MSIVAETSRS SQHARLRRPR KQPTSAPDPT PQTHLIVHPT RKKSTISGLL GSPFSDTNDN AASLLSKKTN KKKTFTSVAL SGLGCVKCLS PVVVGSSGEW
101: GANKVRKKKK KKQRMRVENA TAKTTTLNGA MSPRVVVVVP DLCCTPGIGL AASNAALVDF VEPTRSLSSR GRVNAHRTNN RERGRTRRRG SDHDQASGSH
201: ISNARRYDDF GHGSSGGLSR SEMMILQSSL LFGENVEGSD RYGDWRLDVD HMSYEELLDL GDRIGYVGTG LREDEIFRCL RNMKHPILDS LPLLSSTGDN
301: WRCSICQEEY EADDEVGRLD CGHCYHIHCI RQWLLRKNAC AVCKAAAAAY N

Best Arabidopsis Sequence Match ( AT1G73760.1 )
(BLAST)

001: MPVSAEPSSS SSTTIGQHMR LQRPRNHRNL PPISTADEPL IPKPSRVSKS AMSSFFLLPE TTKKKPNGTA SFRGLGCTTS ASQQVSVPAV IRSSADWDAS
101: NFKIKKTKKK NKNKGSSSYN GGSIKILSEA STSSSVACAA IPDVWCGPGV GFSTDAVVGG SIDTVVSDPP RRNIPVRRKI DGDKTNSNSN NHREGSSSLL
201: PRRSLNQESN PYFDSDSSFL TSRAEQTDRY HRHLRLPYPD GLAEMMMMQN GFVMGGVLSS FDQFRDMRLN VDNMTYEQLL ELGERIGHVN TGLTEKQIKS
301: CLRKVKPCRQ DTTVADRKCI ICQDEYEAKD EVGELRCGHR FHIDCVNQWL VRKNSCPVCK TMAYNKS

Arabidopsis Description

Putative RING zinc finger protein; 69105-67310 [Source:UniProtKB/TrEMBL;Acc:Q9C9T6]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.