Factsheet for Bra015967.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY60141	Canola	plastid	99.72	99.72
CDX73013	Canola	plastid	95.24	95.77
Bra003830.1-P	Field mustard	nucleus, plastid	73.67	77.58
AT1G73760.1	Thale cress	nucleus, plastid	72.83	70.84
Bra016574.1-P	Field mustard	nucleus	56.02	55.87
VIT_17s0000g03210.t01	Wine grape	nucleus	43.7	42.05
TraesCS3D01G260700.1	Wheat	nucleus	22.97	41.0
KRH41763	Soybean	nucleus	43.14	40.85
KRH48568	Soybean	nucleus	39.5	39.83
Solyc03g118840.2.1	Tomato	nucleus	42.86	39.53
PGSC0003DMT400014732	Potato	nucleus	42.58	39.18
KRH39137	Soybean	nucleus	39.22	37.94
PGSC0003DMT400078539	Potato	plastid	26.05	37.35
GSMUA_Achr4P11130_001	Banana	nucleus, plastid	33.61	35.93
KRH60461	Soybean	nucleus	43.14	35.73
TraesCS3A01G260500.1	Wheat	nucleus	33.89	35.07
TraesCS3B01G293600.1	Wheat	nucleus	33.61	34.99
Solyc12g040390.1.1	Tomato	nucleus, plastid	29.13	34.1
VIT_01s0011g04080.t01	Wine grape	nucleus	33.05	33.62
GSMUA_Achr9P21480_001	Banana	plastid	31.93	33.53
OQU87370	Sorghum	nucleus	32.77	33.52
Zm00001d011636_P001	Maize	nucleus	31.09	32.84
Zm00001d043784_P002	Maize	nucleus	31.65	32.66
Solyc05g008840.1.1	Tomato	nucleus, plastid	19.89	32.27
GSMUA_Achr3P29390_001	Banana	golgi, plastid	33.61	31.58
TraesCS1B01G393400.2	Wheat	nucleus	30.25	31.03
TraesCS1D01G380000.2	Wheat	nucleus	29.69	30.64
GSMUA_Achr1P23200_001	Banana	nucleus	30.81	30.56
HORVU3Hr1G064370.1	Barley	plastid	32.77	30.39
TraesCS1A01G373200.1	Wheat	nucleus	29.13	29.8
Os05t0550000-00	Rice	nucleus	29.41	28.85
EES18624	Sorghum	cytosol, mitochondrion, nucleus, plastid	29.97	28.46
Zm00001d038909_P001	Maize	cytosol, mitochondrion	29.97	27.86
HORVU1Hr1G082970.1	Barley	plastid	28.01	26.53
Bra024009.1-P	Field mustard	nucleus	12.89	26.29
Bra019499.1-P	Field mustard	nucleus	10.08	21.95
Bra022580.1-P	Field mustard	cytosol	8.96	17.78
Bra040450.1-P	Field mustard	nucleus	11.76	17.36
Bra006070.1-P	Field mustard	nucleus	23.53	16.97
Bra027467.1-P	Field mustard	nucleus	18.77	16.34
Bra009015.1-P	Field mustard	plastid	23.53	15.76
Bra027282.1-P	Field mustard	nucleus	17.65	14.16
Bra024007.1-P	Field mustard	nucleus	17.93	13.7
Bra009800.1-P	Field mustard	nucleus	15.69	13.66
Bra001582.1-P	Field mustard	nucleus	16.53	13.5
Bra039659.1-P	Field mustard	nucleus	16.81	13.04
Bra015221.1-P	Field mustard	nucleus	21.29	12.73
Bra038109.1-P	Field mustard	nucleus	17.09	12.71
Bra022466.1-P	Field mustard	nucleus	11.48	12.65
Bra038240.1-P	Field mustard	nucleus	11.76	12.61
Bra023101.1-P	Field mustard	nucleus	18.21	12.2
Bra022579.1-P	Field mustard	cytosol	4.48	12.12
Bra039842.1-P	Field mustard	nucleus	19.89	11.89
Bra033652.1-P	Field mustard	nucleus	20.17	11.71
Bra028576.1-P	Field mustard	cytosol	9.24	11.66
Bra017205.1-P	Field mustard	nucleus	17.37	11.55
Bra014043.1-P	Field mustard	nucleus	17.65	10.94
Bra028293.1-P	Field mustard	nucleus	7.0	10.46
Bra036336.1-P	Field mustard	nucleus	7.0	4.97

Protein Annotations

EnsemblPlants:Bra015967.1	EnsemblPlants:Bra015967.1-P	EnsemblPlantsGene:Bra015967	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR22937	PANTHER:PTHR22937:SF98	PFAM:PF13639	PFscan:PS50089
SEG:seg	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0002541D99	UniProt:M4DHJ0	MapMan:35.1

Description

AT1G73760 (E=5e-117) | zinc finger (C3HC4-type RING finger) family protein

Coordinates

chrA07:-:20021810..20023819

Molecular Weight (calculated)

39210.3 Da

IEP (calculated)

9.527

GRAVY (calculated)

-0.710

Length

357 amino acids

Sequence
(BLAST)

001: MPVSSEPSSS STTIGQHIRL RPRNLPPSAA ADEPLVPKPS RISKSAMSSF FLLPSNETTR KTTSSFRRLG CTSSASQQVS VPAVIRSSAD WGATKTKSKN
101: KNKGTGRYSG GSVKILTEAG DGGNACGAVP DVWCGPGGGF STDAVVDPVD ADPPRRNIPA RRKIDGGDKN ISSTSHKSNQ TEGSSVPPRR SHNQESNPYF
201: DSDLTSRGEQ TQTLFSDRYH RHLRQPYPNG LSEMMLLHNG LVMGGVLSSY DHFRDLRLNV DGMSYEQLLE LGDRIGYVNT GLNEKQIKTC LRKVKPFNKD
301: TPLDDRKCSI CQEDYEAKDE VGKLRCGHRY HISCVKQWLL RKNCCPVCKT MPCVSKS

Best Arabidopsis Sequence Match ( AT1G73760.1 )
(BLAST)

001: MPVSAEPSSS SSTTIGQHMR LQRPRNHRNL PPISTADEPL IPKPSRVSKS AMSSFFLLPE TTKKKPNGTA SFRGLGCTTS ASQQVSVPAV IRSSADWDAS
101: NFKIKKTKKK NKNKGSSSYN GGSIKILSEA STSSSVACAA IPDVWCGPGV GFSTDAVVGG SIDTVVSDPP RRNIPVRRKI DGDKTNSNSN NHREGSSSLL
201: PRRSLNQESN PYFDSDSSFL TSRAEQTDRY HRHLRLPYPD GLAEMMMMQN GFVMGGVLSS FDQFRDMRLN VDNMTYEQLL ELGERIGHVN TGLTEKQIKS
301: CLRKVKPCRQ DTTVADRKCI ICQDEYEAKD EVGELRCGHR FHIDCVNQWL VRKNSCPVCK TMAYNKS

Arabidopsis Description

Putative RING zinc finger protein; 69105-67310 [Source:UniProtKB/TrEMBL;Acc:Q9C9T6]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.