Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc05g008840.1.1 | Tomato | nucleus, plastid | 67.47 | 76.36 |
| PGSC0003DMT400079217 | Potato | cytosol | 18.88 | 47.47 |
| TraesCS3D01G260700.1 | Wheat | nucleus | 25.7 | 32.0 |
| VIT_17s0000g03210.t01 | Wine grape | nucleus | 44.58 | 29.92 |
| VIT_01s0011g04080.t01 | Wine grape | nucleus | 41.37 | 29.34 |
| GSMUA_Achr4P11130_001 | Banana | nucleus, plastid | 36.95 | 27.54 |
| KRH48568 | Soybean | nucleus | 38.96 | 27.4 |
| KRH39137 | Soybean | nucleus | 40.56 | 27.37 |
| Zm00001d011636_P001 | Maize | nucleus | 36.14 | 26.63 |
| GSMUA_Achr9P21480_001 | Banana | plastid | 36.14 | 26.47 |
| CDX73013 | Canola | plastid | 37.35 | 26.2 |
| CDY60141 | Canola | plastid | 37.35 | 26.05 |
| Bra015967.1-P | Field mustard | nucleus | 37.35 | 26.05 |
| TraesCS3B01G293600.1 | Wheat | nucleus | 35.74 | 25.95 |
| Zm00001d043784_P002 | Maize | nucleus | 35.74 | 25.72 |
| Bra003830.1-P | Field mustard | nucleus, plastid | 34.94 | 25.66 |
| PGSC0003DMT400014732 | Potato | nucleus | 39.76 | 25.52 |
| OQU87370 | Sorghum | nucleus | 35.74 | 25.5 |
| Bra016574.1-P | Field mustard | nucleus | 36.55 | 25.42 |
| TraesCS1B01G393400.2 | Wheat | nucleus | 35.34 | 25.29 |
| TraesCS1A01G373200.1 | Wheat | nucleus | 35.34 | 25.21 |
| CDX68213 | Canola | nucleus, plastid | 35.34 | 25.21 |
| CDX96741 | Canola | nucleus | 36.55 | 25.0 |
| CDX83878 | Canola | nucleus | 35.74 | 24.93 |
| TraesCS3A01G260500.1 | Wheat | nucleus | 34.54 | 24.93 |
| CDY11092 | Canola | cytosol, plastid | 34.54 | 24.71 |
| TraesCS1D01G380000.2 | Wheat | nucleus | 34.14 | 24.57 |
| AT1G73760.1 | Thale cress | nucleus, plastid | 36.14 | 24.52 |
| GSMUA_Achr3P29390_001 | Banana | golgi, plastid | 36.95 | 24.21 |
| AT1G17970.1 | Thale cress | nucleus | 35.34 | 23.91 |
| KRH41763 | Soybean | nucleus | 36.14 | 23.87 |
| EES18624 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 34.54 | 22.87 |
| Os05t0550000-00 | Rice | nucleus | 33.33 | 22.8 |
| Zm00001d038909_P001 | Maize | cytosol, mitochondrion | 34.94 | 22.66 |
| HORVU3Hr1G064370.1 | Barley | plastid | 34.94 | 22.6 |
| GSMUA_Achr1P23200_001 | Banana | nucleus | 32.13 | 22.22 |
| HORVU1Hr1G082970.1 | Barley | plastid | 33.33 | 22.02 |
| KRH60461 | Soybean | nucleus | 36.55 | 21.11 |
| PGSC0003DMT400020398 | Potato | nucleus | 14.86 | 20.9 |
| AT4G00070.1 | Thale cress | nucleus | 14.86 | 20.67 |
| PGSC0003DMT400017553 | Potato | nucleus | 16.47 | 16.87 |
| PGSC0003DMT400082375 | Potato | nucleus | 16.06 | 16.26 |
| PGSC0003DMT400037132 | Potato | nucleus | 14.46 | 15.06 |
| AT1G36950.1 | Thale cress | cytosol | 13.65 | 15.04 |
| PGSC0003DMT400095772 | Potato | cytosol | 9.24 | 12.37 |
| PGSC0003DMT400075959 | Potato | nucleus | 26.1 | 11.93 |
| PGSC0003DMT400067670 | Potato | nucleus | 24.9 | 11.74 |
| PGSC0003DMT400054921 | Potato | nucleus | 21.69 | 10.4 |
| PGSC0003DMT400039631 | Potato | nucleus | 22.09 | 10.26 |
| PGSC0003DMT400004449 | Potato | nucleus | 21.69 | 9.96 |
| PGSC0003DMT400039849 | Potato | nucleus | 24.9 | 8.95 |
| PGSC0003DMT400066252 | Potato | nucleus | 24.5 | 8.53 |
| PGSC0003DMT400020528 | Potato | nucleus | 21.69 | 7.84 |
| PGSC0003DMT400032385 | Potato | nucleus | 20.88 | 6.4 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400078539 | EnsemblPlantsGene:PGSC0003DMG400030571 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR22937 | PANTHER:PTHR22937:SF98 | PFAM:PF13639 | PFscan:PS50089 | PGSC:PGSC0003DMG400030571 |
| SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI000294F996 | UniProt:M1D0C1 | MapMan:35.1 |
Description
Ring finger containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400030571]
Coordinates
chr5:+:3505157..3508206
Molecular Weight (calculated)
28364.8 Da
IEP (calculated)
9.112
GRAVY (calculated)
-0.686
Length
249 amino acids
Sequence
(BLAST)
(BLAST)
001: MSMSFGGLGC KGKLNSLVAS APEVIRSAAQ WESSSKQMRK NRRKKMTTLT TNTRNSTNVV CCAPPGIGSA FDVAPRPKTR SNNKEHSRIA RRTSTNGEAI
101: SRSHTSNTRH HCPRSHHRPH IMILRHNLQY ARDIEGDDQY GSWRLDVDDM SYEQLVELSD KIGYVGTGLE EEKIVEYIRK FKLSTIDSYS MLISTDKSWR
201: CTICQEGYKV DDEIGKLECG HYHHIECIKK WLMHKNACPI CKIAAIYEN
101: SRSHTSNTRH HCPRSHHRPH IMILRHNLQY ARDIEGDDQY GSWRLDVDDM SYEQLVELSD KIGYVGTGLE EEKIVEYIRK FKLSTIDSYS MLISTDKSWR
201: CTICQEGYKV DDEIGKLECG HYHHIECIKK WLMHKNACPI CKIAAIYEN
001: MPVSAEPSSS SSTTIGQHMR LQRPRNHRNL PPISTADEPL IPKPSRVSKS AMSSFFLLPE TTKKKPNGTA SFRGLGCTTS ASQQVSVPAV IRSSADWDAS
101: NFKIKKTKKK NKNKGSSSYN GGSIKILSEA STSSSVACAA IPDVWCGPGV GFSTDAVVGG SIDTVVSDPP RRNIPVRRKI DGDKTNSNSN NHREGSSSLL
201: PRRSLNQESN PYFDSDSSFL TSRAEQTDRY HRHLRLPYPD GLAEMMMMQN GFVMGGVLSS FDQFRDMRLN VDNMTYEQLL ELGERIGHVN TGLTEKQIKS
301: CLRKVKPCRQ DTTVADRKCI ICQDEYEAKD EVGELRCGHR FHIDCVNQWL VRKNSCPVCK TMAYNKS
101: NFKIKKTKKK NKNKGSSSYN GGSIKILSEA STSSSVACAA IPDVWCGPGV GFSTDAVVGG SIDTVVSDPP RRNIPVRRKI DGDKTNSNSN NHREGSSSLL
201: PRRSLNQESN PYFDSDSSFL TSRAEQTDRY HRHLRLPYPD GLAEMMMMQN GFVMGGVLSS FDQFRDMRLN VDNMTYEQLL ELGERIGHVN TGLTEKQIKS
301: CLRKVKPCRQ DTTVADRKCI ICQDEYEAKD EVGELRCGHR FHIDCVNQWL VRKNSCPVCK TMAYNKS
Arabidopsis Description
Putative RING zinc finger protein; 69105-67310 [Source:UniProtKB/TrEMBL;Acc:Q9C9T6]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.