Factsheet for PGSC0003DMT400032385

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g062720.1.1	Tomato	nucleus	78.57	82.32
PGSC0003DMT400079217	Potato	cytosol	6.28	51.52
PGSC0003DMT400039631	Potato	nucleus	33.0	50.0
PGSC0003DMT400054921	Potato	nucleus	29.19	45.66
VIT_19s0014g01850.t01	Wine grape	nucleus	25.0	37.73
VIT_03s0097g00680.t01	Wine grape	nucleus	17.49	33.73
VIT_03s0088g01090.t01	Wine grape	nucleus	18.97	33.7
VIT_03s0088g00930.t01	Wine grape	nucleus, plastid	15.89	32.82
KRH22017	Soybean	nucleus	20.57	31.63
KRH55161	Soybean	nucleus	17.49	31.0
KRH26195	Soybean	nucleus	17.12	30.35
KRH30071	Soybean	cytosol	12.81	30.23
CDY24110	Canola	nucleus	16.75	29.57
Bra039659.1-P	Field mustard	nucleus	16.75	29.57
AT1G53190.1	Thale cress	nucleus	17.73	29.15
CDY26006	Canola	nucleus	16.5	29.0
CDY25871	Canola	nucleus	16.38	27.82
Bra038109.1-P	Field mustard	nucleus	16.38	27.71
CDY55839	Canola	nucleus	16.38	27.2
AT3G15070.1	Thale cress	nucleus	15.27	25.51
CDX75805	Canola	cytosol	13.79	25.28
KRH55165	Soybean	nucleus	9.61	25.08
PGSC0003DMT400020398	Potato	nucleus	5.42	24.86
Bra027282.1-P	Field mustard	nucleus	13.55	24.72
CDY68521	Canola	nucleus	13.3	24.49
Bra001582.1-P	Field mustard	nucleus	13.18	24.49
KRH55090	Soybean	nucleus	11.21	24.46
CDX82450	Canola	nucleus	13.42	24.33
CDX97629	Canola	nucleus	13.05	24.04
PGSC0003DMT400082375	Potato	nucleus	6.4	21.14
PGSC0003DMT400004449	Potato	nucleus	14.04	21.03
Os01t0667700-02	Rice	nucleus	13.55	20.99
PGSC0003DMT400017553	Potato	nucleus	6.28	20.99
PGSC0003DMT400078539	Potato	plastid	6.4	20.88
EES03404	Sorghum	nucleus	13.18	20.54
Os05t0564300-01	Rice	nucleus	12.32	20.0
Zm00001d011541_P004	Maize	nucleus	12.93	19.81
TraesCS3B01G272400.4	Wheat	nucleus	12.56	19.32
HORVU3Hr1G061010.4	Barley	nucleus	12.32	19.01
TraesCS3A01G246900.3	Wheat	nucleus	12.32	18.98
Zm00001d009571_P002	Maize	nucleus	11.95	18.95
TraesCS3D01G244600.1	Wheat	nucleus	12.32	18.94
KXG22536	Sorghum	nucleus	11.82	18.9
PGSC0003DMT400037132	Potato	nucleus	5.42	18.41
HORVU1Hr1G087900.1	Barley	cytosol	11.7	18.27
TraesCS1A01G398300.8	Wheat	cytosol	11.95	18.0
TraesCS1D01G405800.9	Wheat	cytosol	11.33	17.56
TraesCS1B01G426200.9	Wheat	cytosol	11.7	17.34
PGSC0003DMT400014732	Potato	nucleus	7.76	16.24
PGSC0003DMT400067670	Potato	nucleus	9.61	14.77
PGSC0003DMT400039849	Potato	nucleus	12.56	14.72
PGSC0003DMT400066252	Potato	nucleus	12.93	14.69
Zm00001d039015_P002	Maize	cytosol	7.39	14.67
PGSC0003DMT400075959	Potato	nucleus	9.36	13.95
PGSC0003DMT400020528	Potato	nucleus	11.45	13.5
PGSC0003DMT400095772	Potato	cytosol	3.08	13.44

Protein Annotations

EnsemblPlants:PGSC0003DMT400032385	EnsemblPlantsGene:PGSC0003DMG400012437	EntrezGene:102600149	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR22937	PANTHER:PTHR22937:SF48	PFAM:PF13639	PFscan:PS50089
PGSC:PGSC0003DMG400012437	RefSeq:XP_015164632.1	RefSeq:XP_015164633.1	SEG:seg	SMART:SM00184	SUPFAM:SSF57850
UniParc:UPI0002967316	UniProt:M1AXC3	MapMan:35.1	:	:	:

Description

Ring finger protein [Source:PGSC_GENE;Acc:PGSC0003DMG400012437]

Coordinates

chr7:-:52876945..52884720

Molecular Weight (calculated)

85218.6 Da

IEP (calculated)

5.692

GRAVY (calculated)

-0.486

Length

812 amino acids

Sequence
(BLAST)

001: MGERNTPHSN HFMTLGADQR SQAYIYPEPC MTYGSFTAFP HPNVNTTVPA PGSLGNFYAP HLPGHQEGAL IYGMPPSNGI QQWHHLTNVG AAFAPPSNYF
101: YPYVAAPAAL RTSPVPAIHG LRDRLPVSGT QGSIGNNADN LGRNDPRMDS TRGSSKQKNV AGNSGNLQRH SALAGPSTSA APVITTANES DVSSNDSVSR
201: EHGGSDSAPL LENGTTSATM DLPVPANHGL RDGLPVSGTT DDSVSSEHGG SDSAPLLENG TTSATMDLPV PANHGLRDGL PVSGTTDDSV SSEHGGSDSA
301: PLLENGTTSA TMDLPVPANH GLRDGLPVSG TTDDSVSSEH GGSDSAPLLE NGTTSATMDL PVPANHGLRD GLPVSGTTDD SVSREHGGSD SAALLENGAA
401: SATMDSPVLA NHGLRDGLPV SGTTDDSVSR EHGGSDSAAL LENGAASATM DSPVLANHGL RDGLPVSGTT DDSVSREHGR SDSAPLLENG VQRSGSRFAS
501: GPDTVLQNNN NHLLQGNYVG QAYQFPGNSW LNMPFNSSGS AAQSWAWRQA APLTYPPAGA GGYVIGAGNM AMRGYQVPSS NGGLTGFMYP PIPQGPPQYH
601: HHLSPNMQTM AGHTMSSYPQ MTASPGRQLQ LSSSNMGPLL PSGFRMYRPH QREFMMRGTN ASHHNLRNGV SMLGVPRFRG VHVVDQHRDM RLDVDRMTYE
701: ELLALEERIG NVSIGLSEDI IVANLKTRIF LSTETPSPLE NVASDQDQKT VCVICQADFK DGEKIGILNC SHEYHEECVK KWLGVKNSCA ICKSAALSTE
801: KKDKEVVTTG GG

Best Arabidopsis Sequence Match ( AT1G53190.1 )
(BLAST)

001: MGQRNRNVDL EMEQQQSQAS LQAEPCILLG SFPQQPDNNN MPAMVAHVPN LEPHSLQDPT YDNSAMFYGL PQYHHHPHQR VPTNFYVPYV AFQAPPGQLP
101: SSSSHGVVGV SPDHEYERNA HFMDHTRGTY KRKNAEGIPG QPQYLSTLAA PFNTPETIAP FGGARNRPGA VTVNTVLPSH APNNFIQGNY AGHHPFPPPG
201: SMWYDQHHGR SDGSPSFWPT PYMHGSNIFA GSIESSSRNP TSFMYPSQLN PRDHYYSHHH HPAPPPVQGM RGQNATLYPH TASSASYRVP PGSFTPQNTM
301: NSGPLGSEMG SSHMGPVQPT GFRIYQHHQR DDSVPVATLR QHRGGVPRLR VMPDDEVALL EFGDFLGGSG NNHIDHHRDM RLDIEEMSYE ELLALSERIG
401: TVNTGLPEED VKNHLKTRTC SGINFEKESS SPRTKDLETE PCTICQESFK NEEKIATLDC GHEYHAECLE KWLIVKNVCP ICKSEALVME KRKV

Arabidopsis Description

At1g53190 [Source:UniProtKB/TrEMBL;Acc:Q5EAI9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.