Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX82450 | Canola | nucleus | 95.49 | 94.42 |
| Bra001582.1-P | Field mustard | nucleus | 93.0 | 94.28 |
| CDX97629 | Canola | nucleus | 63.43 | 63.72 |
| CDY68521 | Canola | nucleus | 62.3 | 62.59 |
| AT3G15070.1 | Thale cress | nucleus | 64.79 | 59.05 |
| CDY26006 | Canola | nucleus | 49.21 | 47.19 |
| CDY24110 | Canola | nucleus | 48.31 | 46.52 |
| CDY25871 | Canola | nucleus | 46.73 | 43.31 |
| CDY55839 | Canola | nucleus | 46.73 | 42.33 |
| VIT_19s0014g01850.t01 | Wine grape | nucleus | 36.34 | 29.93 |
| KRH55161 | Soybean | nucleus | 28.67 | 27.73 |
| KRH30071 | Soybean | cytosol | 21.44 | 27.62 |
| VIT_03s0097g00680.t01 | Wine grape | nucleus | 26.19 | 27.55 |
| VIT_03s0088g00930.t01 | Wine grape | nucleus, plastid | 24.38 | 27.48 |
| KRH26195 | Soybean | nucleus | 28.22 | 27.29 |
| KRH55165 | Soybean | nucleus | 18.74 | 26.69 |
| VIT_03s0088g01090.t01 | Wine grape | nucleus | 27.09 | 26.26 |
| CDY13429 | Canola | cytosol | 14.67 | 25.19 |
| KRH22017 | Soybean | nucleus | 29.12 | 24.43 |
| KRH55090 | Soybean | nucleus | 19.64 | 23.39 |
| Solyc12g014070.1.1 | Tomato | nucleus | 28.22 | 23.36 |
| PGSC0003DMT400039631 | Potato | nucleus | 27.31 | 22.57 |
| PGSC0003DMT400054921 | Potato | nucleus | 26.41 | 22.54 |
| Solyc10g007140.2.1 | Tomato | nucleus | 26.41 | 22.54 |
| CDX97032 | Canola | plastid | 15.35 | 20.3 |
| CDX77848 | Canola | nucleus | 9.48 | 19.81 |
| CDY67192 | Canola | nucleus | 9.48 | 19.72 |
| CDY71882 | Canola | plastid | 15.58 | 19.71 |
| CDX93901 | Canola | nucleus | 10.61 | 19.58 |
| CDY53710 | Canola | nucleus | 10.61 | 19.42 |
| CDX85750 | Canola | nucleus | 16.25 | 18.65 |
| CDY27083 | Canola | nucleus | 8.8 | 17.81 |
| CDX68213 | Canola | nucleus, plastid | 14.0 | 17.77 |
| CDX91624 | Canola | nucleus | 8.8 | 17.73 |
| HORVU3Hr1G061010.4 | Barley | nucleus | 20.99 | 17.68 |
| TraesCS3A01G246900.3 | Wheat | nucleus | 20.77 | 17.46 |
| TraesCS3D01G244600.1 | Wheat | nucleus | 20.77 | 17.42 |
| TraesCS3B01G272400.4 | Wheat | nucleus | 20.77 | 17.42 |
| CDY60141 | Canola | plastid | 14.0 | 17.37 |
| CDY11092 | Canola | cytosol, plastid | 13.54 | 17.24 |
| CDY31919 | Canola | nucleus | 10.61 | 17.22 |
| CDY00512 | Canola | nucleus | 10.61 | 17.22 |
| CDY32973 | Canola | nucleus | 15.8 | 17.07 |
| Os01t0667700-02 | Rice | nucleus | 20.09 | 16.98 |
| CDX73013 | Canola | plastid | 13.54 | 16.9 |
| CDY43590 | Canola | nucleus | 16.03 | 16.86 |
| EES03404 | Sorghum | nucleus | 19.64 | 16.7 |
| CDY40109 | Canola | nucleus | 7.0 | 16.67 |
| Zm00001d011541_P004 | Maize | nucleus | 19.64 | 16.42 |
| KXG22536 | Sorghum | nucleus | 18.74 | 16.34 |
| CDX83878 | Canola | nucleus | 13.09 | 16.25 |
| CDX91625 | Canola | cytosol | 8.35 | 16.16 |
| CDY63645 | Canola | nucleus | 16.7 | 16.02 |
| HORVU1Hr1G087900.1 | Barley | cytosol | 18.74 | 15.96 |
| CDX96741 | Canola | nucleus | 13.09 | 15.93 |
| CDY68658 | Canola | nucleus | 16.7 | 15.78 |
| CDY13433 | Canola | nucleus | 16.48 | 15.67 |
| Os05t0564300-01 | Rice | nucleus | 17.61 | 15.6 |
| CDX79718 | Canola | nucleus | 18.51 | 15.44 |
| Zm00001d009571_P002 | Maize | nucleus | 17.83 | 15.43 |
| CDX95473 | Canola | nucleus | 16.03 | 15.3 |
| TraesCS1D01G405800.9 | Wheat | cytosol | 18.06 | 15.27 |
| CDY27082 | Canola | cytosol | 8.13 | 15.13 |
| CDX70363 | Canola | nucleus | 16.48 | 15.02 |
| CDX78393 | Canola | nucleus | 16.7 | 14.98 |
| CDY55435 | Canola | nucleus | 17.83 | 14.96 |
| CDX88140 | Canola | nucleus | 16.25 | 14.94 |
| CDY24595 | Canola | nucleus | 10.61 | 14.92 |
| CDY68424 | Canola | nucleus | 18.06 | 14.9 |
| TraesCS1A01G398300.8 | Wheat | cytosol | 18.06 | 14.84 |
| CDY25357 | Canola | nucleus | 10.61 | 14.69 |
| TraesCS1B01G426200.9 | Wheat | cytosol | 18.06 | 14.6 |
| CDX97044 | Canola | nucleus | 16.7 | 14.51 |
| Solyc07g062720.1.1 | Tomato | nucleus | 25.06 | 14.32 |
| CDY46757 | Canola | nucleus | 17.16 | 14.26 |
| CDY33429 | Canola | nucleus | 10.61 | 14.24 |
| CDY17114 | Canola | nucleus | 16.93 | 14.12 |
| CDY42218 | Canola | nucleus | 10.61 | 14.07 |
| CDX69813 | Canola | mitochondrion | 16.93 | 14.07 |
| PGSC0003DMT400032385 | Potato | nucleus | 25.28 | 13.79 |
| CDY22376 | Canola | nucleus | 18.96 | 13.66 |
| CDY17061 | Canola | nucleus | 18.51 | 13.53 |
| CDY43220 | Canola | nucleus | 18.51 | 13.46 |
| CDY37230 | Canola | nucleus | 16.93 | 12.73 |
| CDY62314 | Canola | nucleus | 16.93 | 12.67 |
| CDX71531 | Canola | nucleus | 18.06 | 12.56 |
| Zm00001d039015_P002 | Maize | cytosol | 10.61 | 11.49 |
| CDY47948 | Canola | nucleus | 6.77 | 5.96 |
| CDY69560 | Canola | nucleus | 6.77 | 5.89 |
| CDY36635 | Canola | nucleus | 7.22 | 5.37 |
Protein Annotations
| EnsemblPlants:CDX75805 | EnsemblPlantsGene:GSBRNA2T00123760001 | Gene3D:3.30.40.10 | GO:A0A078CG04 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR22937 | PANTHER:PTHR22937:SF48 | PFAM:PF13639 | PFscan:PS50089 |
| ProteinID:CDX75805 | ProteinID:CDX75805.1 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI0004EC86AF |
| MapMan:35.1 | : | : | : | : | : |
Description
BnaC03g38880D
Coordinates
chrLK031805:-:829772..831808
Molecular Weight (calculated)
49940.2 Da
IEP (calculated)
6.239
GRAVY (calculated)
-0.788
Length
443 amino acids
Sequence
(BLAST)
(BLAST)
001: MRQRHIMTGF DMEQHSHPDT PHMNPLPTFL QEPYDNNSML NGLPQYPPPP PHHHHQRASN LGPTMSTPPN LYFPYEPLHA HPLAPGSHES NPHFMGHGYK
101: RKSDEAIIPG NYQYLTEPAP PPETAPLAFP HYATAAYPQP MDQRSVRSRV GAVTMDPPYS QGNYAAHPFP PPAPIWYDQH VNDNNTSDGS SSSSYWLQPP
201: SIPFMHGNAA PRFHEASSSR NDIPFAYPSP NYFSHHPAPP PPPVYPPRMA SASYTVPMTI HDAPYRNVGP VQSTGLTINR QHPRDGFSPA ASLRHHGLPP
301: HLRAFPAYED AFLGEGEFFG DDEVDDHQDM RLDIEDMSYE ELLDLSDHIG TVKTGLSEET VKDLVKRRTY ISTRINLEEA PSTDLETDSC TICQETYKNR
401: DKIATLDCKH EYHPACLEKW LVIKNVCPIC KSEALVMDKN KER
101: RKSDEAIIPG NYQYLTEPAP PPETAPLAFP HYATAAYPQP MDQRSVRSRV GAVTMDPPYS QGNYAAHPFP PPAPIWYDQH VNDNNTSDGS SSSSYWLQPP
201: SIPFMHGNAA PRFHEASSSR NDIPFAYPSP NYFSHHPAPP PPPVYPPRMA SASYTVPMTI HDAPYRNVGP VQSTGLTINR QHPRDGFSPA ASLRHHGLPP
301: HLRAFPAYED AFLGEGEFFG DDEVDDHQDM RLDIEDMSYE ELLDLSDHIG TVKTGLSEET VKDLVKRRTY ISTRINLEEA PSTDLETDSC TICQETYKNR
401: DKIATLDCKH EYHPACLEKW LVIKNVCPIC KSEALVMDKN KER
001: MRQRNMMTGS DMEQNSQSFV PHPEPRIGTN YLYPDIPPVN TVPHLEAHSL QEPYDNNSMF YGPPQYHHQH ASNLGSGMST APNFYVPYVN YEAPPSFLLS
101: HGSNDAVVGV TSTEHERNAH FMDHGFKRKS SEVIPGNSQY PVAPCSFPQL NTSETAPFSF PHFGTYPQPL DQRSVRNRAG AATMDPLLSH GHNNFSQGNY
201: AAHPFPPLGS IWYDQHCNGN RSDGSSSLWS QAPAVPYMHG NIATGSIESG NVCFPRYHET SSSRNPTPSV YQRNHYISHH PVPPPPIVYP HMPSASYAET
301: LHPASYSHMG QVQSTGFRIN QYPGEDFVPA AILRHRELPH FRAMPANENA FWEVGDFYNA VNYVDHHQDM RLDIEDMSYE ELLALSDQIG TVKTGLSSED
401: VKELLKRRTS TRINLEEGPS TDLETDSCTI CQENYKNEDK IATLDCMHKY HAECLKKWLV IKNVCPICKS EALVIEKKKK LRLSSR
101: HGSNDAVVGV TSTEHERNAH FMDHGFKRKS SEVIPGNSQY PVAPCSFPQL NTSETAPFSF PHFGTYPQPL DQRSVRNRAG AATMDPLLSH GHNNFSQGNY
201: AAHPFPPLGS IWYDQHCNGN RSDGSSSLWS QAPAVPYMHG NIATGSIESG NVCFPRYHET SSSRNPTPSV YQRNHYISHH PVPPPPIVYP HMPSASYAET
301: LHPASYSHMG QVQSTGFRIN QYPGEDFVPA AILRHRELPH FRAMPANENA FWEVGDFYNA VNYVDHHQDM RLDIEDMSYE ELLALSDQIG TVKTGLSSED
401: VKELLKRRTS TRINLEEGPS TDLETDSCTI CQENYKNEDK IATLDCMHKY HAECLKKWLV IKNVCPICKS EALVIEKKKK LRLSSR
Arabidopsis Description
At3g15070/K15M2_22 [Source:UniProtKB/TrEMBL;Acc:Q94F54]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.