Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY27083 | Canola | nucleus | 97.27 | 97.72 |
| CDX91625 | Canola | cytosol | 41.36 | 39.74 |
| CDY27082 | Canola | cytosol | 39.55 | 36.55 |
| CDY00512 | Canola | nucleus | 41.82 | 33.7 |
| CDY31919 | Canola | nucleus | 41.82 | 33.7 |
| CDX93901 | Canola | nucleus | 25.0 | 22.92 |
| VIT_12s0028g01220.t01 | Wine grape | nucleus | 22.73 | 22.83 |
| CDY53710 | Canola | nucleus | 25.0 | 22.73 |
| EES11283 | Sorghum | nucleus | 25.45 | 22.67 |
| Solyc03g026150.2.1 | Tomato | nucleus | 24.09 | 22.36 |
| PGSC0003DMT400037132 | Potato | nucleus | 24.09 | 22.18 |
| TraesCS2A01G400200.1 | Wheat | nucleus | 25.45 | 22.13 |
| TraesCS2B01G418300.1 | Wheat | cytosol | 25.45 | 22.13 |
| TraesCS2D01G397800.1 | Wheat | cytosol | 25.45 | 21.79 |
| Os04t0571200-01 | Rice | nucleus | 25.0 | 21.65 |
| HORVU2Hr1G094980.4 | Barley | cytosol | 25.45 | 21.13 |
| CDX77848 | Canola | nucleus | 17.73 | 18.4 |
| CDY67192 | Canola | nucleus | 17.73 | 18.31 |
| CDY25357 | Canola | nucleus | 25.0 | 17.19 |
| CDY24595 | Canola | nucleus | 24.09 | 16.83 |
| GSMUA_Achr4P30500_001 | Banana | nucleus | 25.91 | 16.81 |
| Zm00001d002624_P003 | Maize | cytosol | 24.55 | 16.07 |
| CDY42218 | Canola | nucleus | 24.09 | 15.87 |
| CDY33429 | Canola | nucleus | 23.18 | 15.45 |
| CDY13429 | Canola | cytosol | 16.82 | 14.34 |
| CDX97032 | Canola | plastid | 17.27 | 11.34 |
| CDY71882 | Canola | plastid | 17.73 | 11.14 |
| CDX83878 | Canola | nucleus | 17.73 | 10.92 |
| CDX96741 | Canola | nucleus | 17.73 | 10.71 |
| CDY11092 | Canola | cytosol, plastid | 16.36 | 10.34 |
| CDX68213 | Canola | nucleus, plastid | 16.36 | 10.32 |
| CDX73013 | Canola | plastid | 16.36 | 10.14 |
| CDY60141 | Canola | plastid | 16.36 | 10.08 |
| CDY32973 | Canola | nucleus | 18.18 | 9.76 |
| CDY40109 | Canola | nucleus | 8.18 | 9.68 |
| CDY43590 | Canola | nucleus | 18.18 | 9.5 |
| CDX85750 | Canola | nucleus | 16.36 | 9.33 |
| CDY68521 | Canola | nucleus | 18.18 | 9.07 |
| CDX97629 | Canola | nucleus | 18.18 | 9.07 |
| CDX75805 | Canola | cytosol | 17.73 | 8.8 |
| CDX82450 | Canola | nucleus | 17.73 | 8.71 |
| CDY24110 | Canola | nucleus | 18.18 | 8.7 |
| CDY26006 | Canola | nucleus | 18.18 | 8.66 |
| CDY68658 | Canola | nucleus | 18.18 | 8.53 |
| CDX95473 | Canola | nucleus | 17.73 | 8.41 |
| CDY25871 | Canola | nucleus | 18.18 | 8.37 |
| CDX88140 | Canola | nucleus | 18.18 | 8.3 |
| CDY63645 | Canola | nucleus | 17.27 | 8.23 |
| CDY55839 | Canola | nucleus | 18.18 | 8.18 |
| CDY13433 | Canola | nucleus | 17.27 | 8.15 |
| CDX78393 | Canola | nucleus | 18.18 | 8.1 |
| CDX97044 | Canola | nucleus | 18.64 | 8.04 |
| CDX70363 | Canola | nucleus | 17.73 | 8.02 |
| CDY55435 | Canola | nucleus | 19.09 | 7.95 |
| CDY17114 | Canola | nucleus | 19.09 | 7.91 |
| CDY46757 | Canola | nucleus | 18.64 | 7.69 |
| CDX69813 | Canola | mitochondrion | 18.64 | 7.69 |
| CDY37230 | Canola | nucleus | 20.45 | 7.64 |
| CDY68424 | Canola | nucleus | 18.64 | 7.64 |
| CDY62314 | Canola | nucleus | 20.0 | 7.43 |
| CDX79718 | Canola | nucleus | 17.73 | 7.34 |
| CDY22376 | Canola | nucleus | 18.18 | 6.5 |
| CDY17061 | Canola | nucleus | 17.73 | 6.44 |
| CDY43220 | Canola | nucleus | 17.73 | 6.4 |
| CDX71531 | Canola | nucleus | 17.73 | 6.12 |
| CDY47948 | Canola | nucleus | 5.45 | 2.39 |
| CDY69560 | Canola | nucleus | 4.55 | 1.96 |
| CDY36635 | Canola | nucleus | 4.09 | 1.51 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | GO:A0A078DT22 | InterPro:BB | EnsemblPlants:CDX91624 | ProteinID:CDX91624 |
| ProteinID:CDX91624.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 | GO:GO:0006464 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0040007 |
| GO:GO:0046621 | EnsemblPlantsGene:GSBRNA2T00153062001 | InterPro:IPR001841 | InterPro:IPR013083 | PFAM:PF17123 | PFscan:PS50089 |
| PANTHER:PTHR14155 | PANTHER:PTHR14155:SF75 | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI0004EB942E | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : | : |
Description
BnaC02g15360D
Coordinates
chrLK031868:-:1208856..1210794
Molecular Weight (calculated)
24348.0 Da
IEP (calculated)
4.231
GRAVY (calculated)
-0.607
Length
220 amino acids
Sequence
(BLAST)
(BLAST)
001: MQPNQVEIDE ALAASLLYDD PESIIYDEVT ARQIQQREEE ASLISDEKLA KEWQDMEDLE NHVFPTDDVN QIINQFQDME VNGSTSLHCG SSSHQQGHVG
101: GSIDTSSHSF QPPPPSGDVD PDNMTYEELN ELGESIGAVN KGLSKSTIDQ IPTHKFGASS WFRKKASSSG ETECSICLIE FKKGDTISTL PCAHIYHKEC
201: ISHWLEENKS CCVCKAEVGP
101: GSIDTSSHSF QPPPPSGDVD PDNMTYEELN ELGESIGAVN KGLSKSTIDQ IPTHKFGASS WFRKKASSSG ETECSICLIE FKKGDTISTL PCAHIYHKEC
201: ISHWLEENKS CCVCKAEVGP
001: MSRLVNQSSV DENIAVYLQN ELSELTVNDY AIGREIQQQY QNKSICNDAA IALEIQKEEE ACVHSCLHDD EGLARTLQDL EANLQPSLSD DEKLARYLQE
101: HDELANNTED DIQETHHHQY HPMQVNRSYI PQRDAPSSSR AIFHYDDGEN FSGRYTHTHS PSSISHNPTD DENNDPENMT YEELTELGDS VGDVGKGLSQ
201: ERISRLRTHK YGTKTKSWYC LHMKKKFVAD DSQCSICLME YAKGDKITTL PCKHIYHKDC ISQWLKQNKV CCICKAEVYP
101: HDELANNTED DIQETHHHQY HPMQVNRSYI PQRDAPSSSR AIFHYDDGEN FSGRYTHTHS PSSISHNPTD DENNDPENMT YEELTELGDS VGDVGKGLSQ
201: ERISRLRTHK YGTKTKSWYC LHMKKKFVAD DSQCSICLME YAKGDKITTL PCKHIYHKDC ISQWLKQNKV CCICKAEVYP
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q1PDK3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.