Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra028293.1-P | Field mustard | nucleus | 84.98 | 97.07 |
| CDY31919 | Canola | nucleus | 96.7 | 96.7 |
| AT5G52140.1 | Thale cress | nucleus | 63.0 | 61.43 |
| CDX91624 | Canola | nucleus | 33.7 | 41.82 |
| CDY27083 | Canola | nucleus | 33.33 | 41.55 |
| CDX91625 | Canola | cytosol | 32.97 | 39.3 |
| CDY27082 | Canola | cytosol | 31.87 | 36.55 |
| Solyc03g026150.2.1 | Tomato | nucleus | 23.44 | 27.0 |
| PGSC0003DMT400037132 | Potato | nucleus | 22.71 | 25.94 |
| TraesCS2B01G418300.1 | Wheat | cytosol | 23.81 | 25.69 |
| CDY53710 | Canola | nucleus | 22.71 | 25.62 |
| CDX93901 | Canola | nucleus | 22.34 | 25.42 |
| TraesCS2A01G400200.1 | Wheat | nucleus | 23.44 | 25.3 |
| TraesCS2D01G397800.1 | Wheat | cytosol | 23.81 | 25.29 |
| HORVU2Hr1G094980.4 | Barley | cytosol | 24.18 | 24.91 |
| Os04t0571200-01 | Rice | nucleus | 23.08 | 24.8 |
| VIT_12s0028g01220.t01 | Wine grape | nucleus | 19.78 | 24.66 |
| EES11283 | Sorghum | nucleus | 21.25 | 23.48 |
| CDX77848 | Canola | nucleus | 15.75 | 20.28 |
| CDY24595 | Canola | nucleus | 23.08 | 20.0 |
| CDY25357 | Canola | nucleus | 23.08 | 19.69 |
| CDY67192 | Canola | nucleus | 15.02 | 19.25 |
| CDY42218 | Canola | nucleus | 23.44 | 19.16 |
| GSMUA_Achr4P30500_001 | Banana | nucleus | 23.44 | 18.88 |
| CDY33429 | Canola | nucleus | 22.71 | 18.79 |
| Zm00001d002624_P003 | Maize | cytosol | 20.88 | 16.96 |
| CDY13429 | Canola | cytosol | 14.29 | 15.12 |
| CDX97032 | Canola | plastid | 16.48 | 13.43 |
| CDX68213 | Canola | nucleus, plastid | 16.48 | 12.89 |
| CDY71882 | Canola | plastid | 16.48 | 12.86 |
| CDX73013 | Canola | plastid | 16.48 | 12.68 |
| CDY60141 | Canola | plastid | 16.48 | 12.61 |
| CDX85750 | Canola | nucleus | 17.58 | 12.44 |
| CDY11092 | Canola | cytosol, plastid | 15.75 | 12.36 |
| CDY40109 | Canola | nucleus | 8.06 | 11.83 |
| CDX96741 | Canola | nucleus | 14.65 | 10.99 |
| CDX97629 | Canola | nucleus | 17.58 | 10.88 |
| CDX82450 | Canola | nucleus | 17.58 | 10.71 |
| CDX83878 | Canola | nucleus | 13.92 | 10.64 |
| CDX75805 | Canola | cytosol | 17.22 | 10.61 |
| CDY68521 | Canola | nucleus | 16.85 | 10.43 |
| CDY32973 | Canola | nucleus | 15.38 | 10.24 |
| CDY68658 | Canola | nucleus | 17.22 | 10.02 |
| CDY43590 | Canola | nucleus | 15.38 | 9.98 |
| CDX70363 | Canola | nucleus | 17.58 | 9.88 |
| CDX88140 | Canola | nucleus | 17.22 | 9.75 |
| CDX78393 | Canola | nucleus | 17.58 | 9.72 |
| CDX95473 | Canola | nucleus | 16.48 | 9.7 |
| CDY25871 | Canola | nucleus | 16.85 | 9.62 |
| CDY24110 | Canola | nucleus | 16.12 | 9.57 |
| CDY63645 | Canola | nucleus | 16.12 | 9.52 |
| CDY26006 | Canola | nucleus | 16.12 | 9.52 |
| CDX97044 | Canola | nucleus | 17.58 | 9.41 |
| CDY55839 | Canola | nucleus | 16.85 | 9.41 |
| CDY13433 | Canola | nucleus | 15.75 | 9.23 |
| CDX69813 | Canola | mitochondrion | 17.22 | 8.82 |
| CDY46757 | Canola | nucleus | 16.48 | 8.44 |
| CDX79718 | Canola | nucleus | 16.12 | 8.29 |
| CDY17114 | Canola | nucleus | 15.38 | 7.91 |
| CDY68424 | Canola | nucleus | 15.38 | 7.82 |
| CDY55435 | Canola | nucleus | 15.02 | 7.77 |
| CDY37230 | Canola | nucleus | 16.48 | 7.64 |
| CDY62314 | Canola | nucleus | 16.12 | 7.43 |
| CDY22376 | Canola | nucleus | 16.48 | 7.32 |
| CDX71531 | Canola | nucleus | 16.85 | 7.22 |
| CDY17061 | Canola | nucleus | 15.75 | 7.1 |
| CDY43220 | Canola | nucleus | 15.38 | 6.9 |
| CDY47948 | Canola | nucleus | 5.13 | 2.78 |
| CDY69560 | Canola | nucleus | 4.03 | 2.16 |
| CDY36635 | Canola | nucleus | 4.03 | 1.85 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | GO:A0A078EHD8 | InterPro:BB | EnsemblPlants:CDY00512 | ProteinID:CDY00512 |
| ProteinID:CDY00512.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 | GO:GO:0006464 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0040007 |
| GO:GO:0046621 | EnsemblPlantsGene:GSBRNA2T00110236001 | InterPro:IPR001841 | InterPro:IPR013083 | PFAM:PF13639 | PFscan:PS50089 |
| PANTHER:PTHR14155 | PANTHER:PTHR14155:SF75 | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI0004EDB30C | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : | : |
Description
BnaA10g07610D
Coordinates
chrLK031919:-:939766..942140
Molecular Weight (calculated)
31057.8 Da
IEP (calculated)
4.330
GRAVY (calculated)
-0.786
Length
273 amino acids
Sequence
(BLAST)
(BLAST)
001: MPRLVNQSSI DENIAMFLQF GLSEDSDLTV NDDVIAREIQ QQYPNNSDLT ANDDVIAREI QQQYQNNLTY DDTAIALEIQ KQEGNLPTSL SDDEKLARYL
101: QQQDESANST DEDIQGNNSY IPERDAPSTS RTIIQYDDDD HFSGHHTHTR TQSNSPSISS LDLSTNENTD PANMTYEELN ELEDSMGNVD RGLSQRRISK
201: LPTYKYGAET KTCCWQIRKK KFIATDTQCS ICLVDYVMGD KITTLPCKHI YHKDCISQWL KQSKVCCVCK AEV
101: QQQDESANST DEDIQGNNSY IPERDAPSTS RTIIQYDDDD HFSGHHTHTR TQSNSPSISS LDLSTNENTD PANMTYEELN ELEDSMGNVD RGLSQRRISK
201: LPTYKYGAET KTCCWQIRKK KFIATDTQCS ICLVDYVMGD KITTLPCKHI YHKDCISQWL KQSKVCCVCK AEV
001: MSRLVNQSSV DENIAVYLQN ELSELTVNDY AIGREIQQQY QNKSICNDAA IALEIQKEEE ACVHSCLHDD EGLARTLQDL EANLQPSLSD DEKLARYLQE
101: HDELANNTED DIQETHHHQY HPMQVNRSYI PQRDAPSSSR AIFHYDDGEN FSGRYTHTHS PSSISHNPTD DENNDPENMT YEELTELGDS VGDVGKGLSQ
201: ERISRLRTHK YGTKTKSWYC LHMKKKFVAD DSQCSICLME YAKGDKITTL PCKHIYHKDC ISQWLKQNKV CCICKAEVYP
101: HDELANNTED DIQETHHHQY HPMQVNRSYI PQRDAPSSSR AIFHYDDGEN FSGRYTHTHS PSSISHNPTD DENNDPENMT YEELTELGDS VGDVGKGLSQ
201: ERISRLRTHK YGTKTKSWYC LHMKKKFVAD DSQCSICLME YAKGDKITTL PCKHIYHKDC ISQWLKQNKV CCICKAEVYP
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q1PDK3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.