Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY67192 | Canola | nucleus | 93.87 | 93.43 |
| Bra019499.1-P | Field mustard | nucleus | 70.75 | 91.46 |
| AT3G47180.1 | Thale cress | cytosol | 80.19 | 80.95 |
| KRH16389 | Soybean | nucleus | 44.34 | 45.85 |
| KRH17980 | Soybean | nucleus | 42.92 | 44.83 |
| PGSC0003DMT400020398 | Potato | nucleus | 37.26 | 44.63 |
| KRH64669 | Soybean | nucleus | 41.98 | 44.06 |
| Solyc12g010500.1.1 | Tomato | nucleus | 36.79 | 43.58 |
| VIT_18s0001g02280.t01 | Wine grape | nucleus | 41.51 | 42.51 |
| KRH53246 | Soybean | nucleus | 36.32 | 42.08 |
| CDX93901 | Canola | nucleus | 27.83 | 24.58 |
| CDY53710 | Canola | nucleus | 27.83 | 24.38 |
| CDY27083 | Canola | nucleus | 18.4 | 17.81 |
| CDX91624 | Canola | nucleus | 18.4 | 17.73 |
| CDY24595 | Canola | nucleus | 25.47 | 17.14 |
| CDY25357 | Canola | nucleus | 25.47 | 16.88 |
| CDY33429 | Canola | nucleus | 25.47 | 16.36 |
| CDY42218 | Canola | nucleus | 25.47 | 16.17 |
| CDY31919 | Canola | nucleus | 20.28 | 15.75 |
| CDY00512 | Canola | nucleus | 20.28 | 15.75 |
| CDY13429 | Canola | cytosol | 18.4 | 15.12 |
| CDX91625 | Canola | cytosol | 15.09 | 13.97 |
| CDX97032 | Canola | plastid | 20.75 | 13.13 |
| CDY27082 | Canola | cytosol | 14.62 | 13.03 |
| CDY71882 | Canola | plastid | 20.75 | 12.57 |
| CDY32973 | Canola | nucleus | 22.17 | 11.46 |
| CDX85750 | Canola | nucleus | 20.75 | 11.4 |
| CDX68213 | Canola | nucleus, plastid | 18.4 | 11.17 |
| CDY43590 | Canola | nucleus | 22.17 | 11.16 |
| CDY11092 | Canola | cytosol, plastid | 17.92 | 10.92 |
| CDX73013 | Canola | plastid | 17.92 | 10.7 |
| CDY60141 | Canola | plastid | 17.92 | 10.64 |
| CDX83878 | Canola | nucleus | 17.45 | 10.36 |
| CDY40109 | Canola | nucleus | 8.96 | 10.22 |
| CDX96741 | Canola | nucleus | 17.45 | 10.16 |
| CDY24110 | Canola | nucleus | 21.7 | 10.0 |
| CDY26006 | Canola | nucleus | 21.7 | 9.96 |
| CDX79718 | Canola | nucleus | 24.53 | 9.79 |
| CDY17114 | Canola | nucleus | 24.53 | 9.79 |
| CDY68521 | Canola | nucleus | 20.28 | 9.75 |
| CDX95473 | Canola | nucleus | 21.23 | 9.7 |
| CDX97629 | Canola | nucleus | 19.81 | 9.52 |
| CDX75805 | Canola | cytosol | 19.81 | 9.48 |
| CDY55435 | Canola | nucleus | 23.58 | 9.47 |
| CDX97044 | Canola | nucleus | 22.64 | 9.41 |
| CDY68658 | Canola | nucleus | 20.75 | 9.38 |
| CDY46757 | Canola | nucleus | 23.58 | 9.38 |
| CDX82450 | Canola | nucleus | 19.81 | 9.38 |
| CDY63645 | Canola | nucleus | 20.28 | 9.31 |
| CDX88140 | Canola | nucleus | 20.75 | 9.13 |
| CDX78393 | Canola | nucleus | 21.23 | 9.11 |
| CDY13433 | Canola | nucleus | 19.81 | 9.01 |
| CDY55839 | Canola | nucleus | 20.75 | 9.0 |
| CDY25871 | Canola | nucleus | 20.28 | 9.0 |
| CDY68424 | Canola | nucleus | 22.64 | 8.94 |
| CDX70363 | Canola | nucleus | 19.81 | 8.64 |
| CDX69813 | Canola | mitochondrion | 21.7 | 8.63 |
| CDY22376 | Canola | nucleus | 24.53 | 8.46 |
| CDY37230 | Canola | nucleus | 23.11 | 8.32 |
| CDY62314 | Canola | nucleus | 23.11 | 8.28 |
| CDY17061 | Canola | nucleus | 23.58 | 8.25 |
| CDY43220 | Canola | nucleus | 23.58 | 8.21 |
| CDX71531 | Canola | nucleus | 23.58 | 7.85 |
| CDY47948 | Canola | nucleus | 7.08 | 2.98 |
| CDY69560 | Canola | nucleus | 4.72 | 1.96 |
| CDY36635 | Canola | nucleus | 4.72 | 1.68 |
Protein Annotations
| EnsemblPlants:CDX77848 | EnsemblPlantsGene:GSBRNA2T00128972001 | Gene3D:3.30.40.10 | GO:A0A078CRR5 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR14155 | PANTHER:PTHR14155:SF112 | PFAM:PF13639 | PFscan:PS50089 |
| ProteinID:CDX77848 | ProteinID:CDX77848.1 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI0004EE9481 |
| MapMan:35.1 | : | : | : | : | : |
Description
BnaC03g53710D
Coordinates
chrLK031813:+:585891..586529
Molecular Weight (calculated)
24217.3 Da
IEP (calculated)
3.821
GRAVY (calculated)
-0.862
Length
212 amino acids
Sequence
(BLAST)
(BLAST)
001: MDNQEEDPKQ PPNKLPDDLT LFEQANSEVA LAASQANSHF PPRIHDLASS RFSMMESDGE SEEEGDEGRN DNYYEYFDSN GFGEDEDEIN DFLEDQESNS
101: YVEEDDFLEE EDEIDPDQLS YEELIALGEF IGVEKRGLTQ TEISTCLKPS SYVFSHNKNE IDRCVVCQME FEEGESLVIL RLCNHSYHSE CITKWLQTKK
201: VCPICGSEPS HG
101: YVEEDDFLEE EDEIDPDQLS YEELIALGEF IGVEKRGLTQ TEISTCLKPS SYVFSHNKNE IDRCVVCQME FEEGESLVIL RLCNHSYHSE CITKWLQTKK
201: VCPICGSEPS HG
001: MDNQEEEPKQ PPNKLPDLAL FEQANSEVAL AASQANSHFA HAMHDSSPSM ISMIESDEES EDEEEINENY YEYFDSNGFG VDEDEINEFL EDQESNSNLE
101: EEDDFLEEED EIDPDQLSYE ELIALGDFIG VENRGLTPIE ISTCLNASTY VFSHNKNEID RCVVCQMEFE ERESLVVLRP CDHPYHSECI TKWLETKKIC
201: PICCSEPSVS
101: EEDDFLEEED EIDPDQLSYE ELIALGDFIG VENRGLTPIE ISTCLNASTY VFSHNKNEID RCVVCQMEFE ERESLVVLRP CDHPYHSECI TKWLETKKIC
201: PICCSEPSVS
Arabidopsis Description
At3g47180 [Source:UniProtKB/TrEMBL;Acc:Q9SD55]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.