Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc12g010500.1.1 | Tomato | nucleus | 97.74 | 96.65 |
| Bra019499.1-P | Field mustard | nucleus | 41.24 | 44.51 |
| VIT_18s0001g02280.t01 | Wine grape | nucleus | 51.41 | 43.96 |
| KRH53246 | Soybean | nucleus | 45.2 | 43.72 |
| KRH64669 | Soybean | nucleus | 49.15 | 43.07 |
| KRH16389 | Soybean | nucleus | 46.89 | 40.49 |
| KRH17980 | Soybean | nucleus | 46.33 | 40.39 |
| PGSC0003DMT400079217 | Potato | cytosol | 20.9 | 37.37 |
| CDX77848 | Canola | nucleus | 44.63 | 37.26 |
| AT3G47180.1 | Thale cress | cytosol | 44.07 | 37.14 |
| CDY67192 | Canola | nucleus | 44.63 | 37.09 |
| PGSC0003DMT400017553 | Potato | nucleus | 31.64 | 23.05 |
| PGSC0003DMT400082375 | Potato | nucleus | 29.38 | 21.14 |
| PGSC0003DMT400037132 | Potato | nucleus | 27.68 | 20.5 |
| PGSC0003DMT400078539 | Potato | plastid | 20.9 | 14.86 |
| PGSC0003DMT400095772 | Potato | cytosol | 12.43 | 11.83 |
| PGSC0003DMT400014732 | Potato | nucleus | 22.6 | 10.31 |
| PGSC0003DMT400067670 | Potato | nucleus | 28.81 | 9.66 |
| PGSC0003DMT400039631 | Potato | nucleus | 27.68 | 9.14 |
| PGSC0003DMT400075959 | Potato | nucleus | 25.99 | 8.44 |
| PGSC0003DMT400004449 | Potato | nucleus | 25.42 | 8.3 |
| PGSC0003DMT400054921 | Potato | nucleus | 24.29 | 8.29 |
| PGSC0003DMT400039849 | Potato | nucleus | 27.12 | 6.93 |
| PGSC0003DMT400020528 | Potato | nucleus | 24.29 | 6.24 |
| PGSC0003DMT400066252 | Potato | nucleus | 24.29 | 6.01 |
| PGSC0003DMT400032385 | Potato | nucleus | 24.86 | 5.42 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400020398 | EnsemblPlantsGene:PGSC0003DMG400007883 | EntrezGene:102581976 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR14155 | PANTHER:PTHR14155:SF112 | PFAM:PF13639 | PFscan:PS50089 |
| PGSC:PGSC0003DMG400007883 | RefSeq:XP_006350142.1 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI000294DCA9 |
| UniProt:M1ADE9 | MapMan:35.1 | : | : | : | : |
Description
Ring finger protein [Source:PGSC_GENE;Acc:PGSC0003DMG400007883]
Coordinates
chr12:-:1890917..1892725
Molecular Weight (calculated)
20449.3 Da
IEP (calculated)
3.762
GRAVY (calculated)
-0.807
Length
177 amino acids
Sequence
(BLAST)
(BLAST)
001: MADDEQRKPT TRRTPLSQID EDRVCIMLSM DESESEDEEI TASDEEFLDS EIQDFELEFY DDEYDDDNME EDDVDPDELS YEELIALGEF VGVENRGLTE
101: EEINKSLHSS TFQSNNSKTL VDKCVVCQLE YEEGEKLVAL PCDHPYHLDC IKKWLQIKKV CPICSDEVSS TNVPKEQ
101: EEINKSLHSS TFQSNNSKTL VDKCVVCQLE YEEGEKLVAL PCDHPYHLDC IKKWLQIKKV CPICSDEVSS TNVPKEQ
001: MDNQEEEPKQ PPNKLPDLAL FEQANSEVAL AASQANSHFA HAMHDSSPSM ISMIESDEES EDEEEINENY YEYFDSNGFG VDEDEINEFL EDQESNSNLE
101: EEDDFLEEED EIDPDQLSYE ELIALGDFIG VENRGLTPIE ISTCLNASTY VFSHNKNEID RCVVCQMEFE ERESLVVLRP CDHPYHSECI TKWLETKKIC
201: PICCSEPSVS
101: EEDDFLEEED EIDPDQLSYE ELIALGDFIG VENRGLTPIE ISTCLNASTY VFSHNKNEID RCVVCQMEFE ERESLVVLRP CDHPYHSECI TKWLETKKIC
201: PICCSEPSVS
Arabidopsis Description
At3g47180 [Source:UniProtKB/TrEMBL;Acc:Q9SD55]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.