Factsheet for PGSC0003DMT400017553

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g087060.2.1	Tomato	nucleus	97.53	64.05
VIT_13s0064g01030.t01	Wine grape	nucleus	52.67	51.82
KRH27487	Soybean	cytosol, nucleus, plastid	48.97	48.18
KRH20832	Soybean	nucleus	48.15	47.37
AT3G63530.2	Thale cress	cytosol	45.68	44.76
Bra040450.1-P	Field mustard	nucleus	43.21	43.39
CDY53710	Canola	nucleus	43.21	43.39
PGSC0003DMT400082375	Potato	nucleus	43.62	43.09
CDX93901	Canola	nucleus	42.39	42.92
PGSC0003DMT400079217	Potato	cytosol	13.99	34.34
PGSC0003DMT400020398	Potato	nucleus	23.05	31.64
PGSC0003DMT400037132	Potato	nucleus	29.63	30.13
PGSC0003DMT400078539	Potato	plastid	16.87	16.47
PGSC0003DMT400014732	Potato	nucleus	17.7	11.08
PGSC0003DMT400039631	Potato	nucleus	23.05	10.45
PGSC0003DMT400095772	Potato	cytosol	7.82	10.22
PGSC0003DMT400054921	Potato	nucleus	21.81	10.21
PGSC0003DMT400004449	Potato	nucleus	21.81	9.78
PGSC0003DMT400067670	Potato	nucleus	19.75	9.09
PGSC0003DMT400075959	Potato	nucleus	20.16	8.99
PGSC0003DMT400039849	Potato	nucleus	23.46	8.23
PGSC0003DMT400020528	Potato	nucleus	18.52	6.53
PGSC0003DMT400066252	Potato	nucleus	18.52	6.29
PGSC0003DMT400032385	Potato	nucleus	20.99	6.28

Protein Annotations

EntrezGene:102594854	Gene3D:3.30.40.10	MapMan:35.1	InterPro:BB	GO:GO:0000003	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008285	GO:GO:0009791	GO:GO:0009908	GO:GO:0009987
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0031624	GO:GO:0040007	GO:GO:0046621
GO:GO:0048437	GO:GO:0051865	GO:GO:1900057	InterPro:IPR001841	InterPro:IPR013083	UniProt:M1A929
PFAM:PF13639	EnsemblPlantsGene:PGSC0003DMG400006807	PGSC:PGSC0003DMG400006807	EnsemblPlants:PGSC0003DMT400017553	PFscan:PS50089	PANTHER:PTHR14155
PANTHER:PTHR14155:SF75	SUPFAM:SSF57850	UniParc:UPI0002957A59	RefSeq:XP_006345461.2	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD

Description

E3 ubiquitin ligase BIG BROTHER [Source:PGSC_GENE;Acc:PGSC0003DMG400006807]

Coordinates

chr1:+:65958695..65964505

Molecular Weight (calculated)

28148.5 Da

IEP (calculated)

4.296

GRAVY (calculated)

-0.803

Length

243 amino acids

Sequence
(BLAST)

001: MSGDQHMEEM HYMNMGFPYN VPESFPGFLD GVSQAPIVQY HNNPVQIQEN AYWSMNMSYY KYEHSNLEST SYHSYENGNN HVSRPDFSER PWEYAVPMNV
101: HEGVSTDVIY EENTVPVEDA GTEECVLSNQ DDSNHQDILE DEIDPDNMTY EELLDLGETV GTESRGLPEE LINLLPTTKY KSNGIFSRKK SEERCVICQM
201: RYKRGDRQIN FPCKHIYHTE CGSKWLSINK TCPICNTEVL LDE

Best Arabidopsis Sequence Match ( AT3G63530.1 )
(BLAST)

001: MNGDNRPVED AHYTETGFPY AATGSYMDFY GGAAQGPLNY DHAATMHPQD NLYWTMNTNA YKFGFSGSDN ASFYGSYDMN DHLSRMSIGR TNWDYHPMVN
101: VADDPENTVA RSVQIGDTDE HSEAEECIAN EHDPDSPQVS WQDDIDPDTM TYEELVELGE AVGTESRGLS QELIETLPTK KYKFGSIFSR KRAGERCVIC
201: QLKYKIGERQ MNLPCKHVYH SECISKWLSI NKVCPVCNSE VFGEPSIH

Arabidopsis Description

BBBB2 [Source:UniProtKB/TrEMBL;Acc:A0A178VG02]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.