Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400017553 | Potato | nucleus | 64.05 | 97.53 |
| VIT_13s0064g01030.t01 | Wine grape | nucleus | 33.78 | 50.61 |
| KRH27487 | Soybean | cytosol, nucleus, plastid | 32.16 | 48.18 |
| KRH20832 | Soybean | nucleus | 31.62 | 47.37 |
| AT3G63530.2 | Thale cress | cytosol | 29.73 | 44.35 |
| Bra040450.1-P | Field mustard | nucleus | 28.11 | 42.98 |
| CDY53710 | Canola | nucleus | 28.11 | 42.98 |
| Solyc11g062260.1.1 | Tomato | nucleus | 28.38 | 42.68 |
| CDX93901 | Canola | nucleus | 27.57 | 42.5 |
| Solyc12g010500.1.1 | Tomato | nucleus | 14.86 | 30.73 |
| Solyc03g026150.2.1 | Tomato | nucleus | 18.92 | 29.54 |
| Solyc12g040390.1.1 | Tomato | nucleus, plastid | 11.62 | 14.1 |
| Solyc02g005480.2.1 | Tomato | nucleus | 9.46 | 13.06 |
| Solyc09g007620.1.1 | Tomato | nucleus | 5.41 | 11.43 |
| Solyc12g019190.1.1 | Tomato | mitochondrion | 6.76 | 11.36 |
| Solyc03g118840.2.1 | Tomato | nucleus | 11.62 | 11.11 |
| Solyc12g019200.1.1 | Tomato | mitochondrion | 6.49 | 10.91 |
| Solyc12g014070.1.1 | Tomato | nucleus | 15.41 | 10.65 |
| Solyc10g007140.2.1 | Tomato | nucleus | 14.59 | 10.4 |
| Solyc09g007530.2.1 | Tomato | nucleus | 14.32 | 9.78 |
| Solyc12g096420.1.1 | Tomato | nucleus | 14.32 | 9.62 |
| Solyc08g006460.2.1 | Tomato | nucleus | 13.24 | 9.23 |
| Solyc05g008840.1.1 | Tomato | nucleus, plastid | 5.14 | 8.64 |
| Solyc12g088740.1.1 | Tomato | nucleus | 15.41 | 8.23 |
| Solyc04g078680.2.1 | Tomato | nucleus | 15.14 | 7.76 |
| Solyc10g050170.1.1 | Tomato | mitochondrion, nucleus | 14.86 | 7.58 |
| Solyc07g062720.1.1 | Tomato | nucleus | 14.59 | 6.97 |
| Solyc01g107940.2.1 | Tomato | nucleus | 12.16 | 6.36 |
| Solyc01g107930.2.1 | Tomato | nucleus | 12.16 | 6.27 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | InterPro:BB | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004842 | GO:GO:0006464 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 |
| GO:GO:0009791 | GO:GO:0009908 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 |
| GO:GO:0040007 | GO:GO:0043161 | GO:GO:0046621 | GO:GO:0048437 | GO:GO:0061630 | InterPro:IPR001841 |
| InterPro:IPR013083 | UniProt:K4AY99 | PFAM:PF13639 | PFscan:PS50089 | PANTHER:PTHR14155 | PANTHER:PTHR14155:SF75 |
| SUPFAM:SSF57850 | EnsemblPlantsGene:Solyc01g087060.2 | EnsemblPlants:Solyc01g087060.2.1 | UniParc:UPI0002762F8F | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr1:-:81993938..81998911
Molecular Weight (calculated)
42898.1 Da
IEP (calculated)
4.860
GRAVY (calculated)
-0.676
Length
370 amino acids
Sequence
(BLAST)
(BLAST)
001: MRRSNDRYID IDGVSLKPGT SGSGPVCARE RETDKDRDTD RDRDRDKQKR EREGDSIYMY LSIYIYIQKS STYIPTKSTF HFSTTIWSLL CCFLTHQHTT
101: TLSVSVFLLH FFSDLLVVPL KSVKKMSGDQ HMEAMHYMNM GFPYNVPESF PGFLDGVSQA PIIQYHNNPV QIQDQENAYW SMNMSYYKYE HSNLESTSYH
201: SYETGNNHVS RPDFSERPWE YAVPMNVHEG VSTDVIYEEN TVPVEDVGTE ECVLSNQDDS NHQDILEDEI DLDNMTYEEL LDLGETVGTE SRGLAEELIN
301: LLPTTKYKSN GIFSRKKSEE RCVICQMRYK RGDRQINFPC KHIYHTECGS KWLSINKTCP ICNTEVLLDE
101: TLSVSVFLLH FFSDLLVVPL KSVKKMSGDQ HMEAMHYMNM GFPYNVPESF PGFLDGVSQA PIIQYHNNPV QIQDQENAYW SMNMSYYKYE HSNLESTSYH
201: SYETGNNHVS RPDFSERPWE YAVPMNVHEG VSTDVIYEEN TVPVEDVGTE ECVLSNQDDS NHQDILEDEI DLDNMTYEEL LDLGETVGTE SRGLAEELIN
301: LLPTTKYKSN GIFSRKKSEE RCVICQMRYK RGDRQINFPC KHIYHTECGS KWLSINKTCP ICNTEVLLDE
001: MNGDNRPVED AHYTETGFPY AATGSYMDFY GGAAQGPLNY DHAATMHPQD NLYWTMNTNA YKFGFSGSDN ASFYGSYDMN DHLSRMSIGR TNWDYHPMVN
101: VADDPENTVA RSVQIGDTDE HSEAEECIAN EHDPDSPQVS WQDDIDPDTM TYEELVELGE AVGTESRGLS QELIETLPTK KYKFGSIFSR KRAGERCVIC
201: QLKYKIGERQ MNLPCKHVYH SECISKWLSI NKVCPVCNSE VFGEPSIH
101: VADDPENTVA RSVQIGDTDE HSEAEECIAN EHDPDSPQVS WQDDIDPDTM TYEELVELGE AVGTESRGLS QELIETLPTK KYKFGSIFSR KRAGERCVIC
201: QLKYKIGERQ MNLPCKHVYH SECISKWLSI NKVCPVCNSE VFGEPSIH
Arabidopsis Description
BBBB2 [Source:UniProtKB/TrEMBL;Acc:A0A178VG02]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.