Factsheet for VIT_13s0064g01030.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH27487	Soybean	cytosol, nucleus, plastid	64.37	64.37
KRH20832	Soybean	nucleus	63.56	63.56
VIT_06s0004g01930.t01	Wine grape	nucleus	56.68	55.56
AT3G63530.2	Thale cress	cytosol	55.06	54.84
CDX93901	Canola	nucleus	52.23	53.75
Bra040450.1-P	Field mustard	nucleus	52.23	53.31
CDY53710	Canola	nucleus	52.23	53.31
PGSC0003DMT400017553	Potato	nucleus	51.82	52.67
VIT_07s0031g00400.t01	Wine grape	cytoskeleton, cytosol, nucleus	14.57	35.29
Solyc01g087060.2.1	Tomato	nucleus	50.61	33.78
VIT_11s0118g00640.t01	Wine grape	nucleus	14.57	30.25
VIT_12s0028g01220.t01	Wine grape	nucleus	26.72	30.14
VIT_18s0001g02280.t01	Wine grape	nucleus	23.89	28.5
VIT_16s0022g00290.t01	Wine grape	nucleus	8.5	27.63
VIT_07s0031g00380.t01	Wine grape	cytosol	7.69	27.14
VIT_07s0031g00370.t01	Wine grape	mitochondrion	15.79	26.9
VIT_10s0042g00580.t01	Wine grape	nucleus	29.96	24.03
VIT_07s0031g00440.t01	Wine grape	nucleus	15.38	17.27
VIT_07s0031g00390.t01	Wine grape	nucleus	14.57	14.75
VIT_17s0000g03210.t01	Wine grape	nucleus	18.62	12.4
VIT_01s0011g04080.t01	Wine grape	nucleus	17.0	11.97
VIT_08s0040g02160.t01	Wine grape	nucleus	23.08	10.44
VIT_04s0008g02390.t01	Wine grape	nucleus	21.86	9.82
VIT_19s0014g01850.t01	Wine grape	nucleus	19.84	9.11
VIT_13s0019g04100.t01	Wine grape	extracellular	20.24	8.85
VIT_03s0088g00930.t01	Wine grape	nucleus, plastid	13.77	8.65
VIT_03s0097g00680.t01	Wine grape	nucleus	14.17	8.31
VIT_03s0088g01090.t01	Wine grape	nucleus	14.98	8.1
VIT_18s0001g10260.t01	Wine grape	nucleus	23.89	8.04
VIT_03s0063g00160.t01	Wine grape	nucleus	23.48	7.9

Protein Annotations

EntrezGene:100253394	wikigene:100253394	Gene3D:3.30.40.10	MapMan:35.1	InterPro:BB	ProteinID:CBI24877
ProteinID:CBI24877.3	UniProt:D7T2Z6	EMBL:FN595509	GO:GO:0000003	GO:GO:0003674	GO:GO:0003824
GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0008285	GO:GO:0009056	GO:GO:0009791	GO:GO:0009908	GO:GO:0009987
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0031624	GO:GO:0040007	GO:GO:0043161
GO:GO:0046621	GO:GO:0048437	GO:GO:0051865	GO:GO:0061630	GO:GO:1900057	InterPro:IPR001841
InterPro:IPR013083	EntrezGene:LOC100253394	wikigene:LOC100253394	PFAM:PF13639	PFscan:PS50089	PANTHER:PTHR14155
PANTHER:PTHR14155:SF75	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0001BE22E1	ArrayExpress:VIT_13s0064g01030	EnsemblPlantsGene:VIT_13s0064g01030
EnsemblPlants:VIT_13s0064g01030.t01	unigene:Vvi.21468	RefSeq:XP_002279794	RefSeq:XP_002279794.2	RefSeq:XP_010659339.1	RefSeq:XP_019079951.1
RefSeq:XP_019079952.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	:	:	:

Description

No Description!

Coordinates

chr13:-:22907333..22911899

Molecular Weight (calculated)

28318.2 Da

IEP (calculated)

5.531

GRAVY (calculated)

-0.634

Length

247 amino acids

Sequence
(BLAST)

001: MNGNRQMEVH YINTGFPYTI TESFMDFFEG LGHVPVNYAQ AEAMHNQSIQ ENFYWTMNMN SYKFGFSGPG STYYGPYDVN EHVPGIEVSR RPWEYPSSMI
101: VEEPTTIETQ PTGNEVMNVH AIPEECSPNH YSATSSQAIW QDNVDPDNMT YEELLDLGEA VGTQSRGLSQ EHINLLPTCR YKSGRLFSRK RSAERCVICQ
201: MGYKRGDRQI KLPCKHVYHT DCGTKWLTIN KVCPVCNIEV FGEESRH

Best Arabidopsis Sequence Match ( AT3G63530.1 )
(BLAST)

001: MNGDNRPVED AHYTETGFPY AATGSYMDFY GGAAQGPLNY DHAATMHPQD NLYWTMNTNA YKFGFSGSDN ASFYGSYDMN DHLSRMSIGR TNWDYHPMVN
101: VADDPENTVA RSVQIGDTDE HSEAEECIAN EHDPDSPQVS WQDDIDPDTM TYEELVELGE AVGTESRGLS QELIETLPTK KYKFGSIFSR KRAGERCVIC
201: QLKYKIGERQ MNLPCKHVYH SECISKWLSI NKVCPVCNSE VFGEPSIH

Arabidopsis Description

BBBB2 [Source:UniProtKB/TrEMBL;Acc:A0A178VG02]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.