Factsheet for VIT_07s0031g00390.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_07s0031g00380.t01	Wine grape	cytosol	22.95	80.0
VIT_07s0031g00400.t01	Wine grape	cytoskeleton, cytosol, nucleus	30.33	72.55
VIT_07s0031g00370.t01	Wine grape	mitochondrion	40.57	68.28
VIT_16s0022g00290.t01	Wine grape	nucleus	13.93	44.74
VIT_11s0118g00640.t01	Wine grape	nucleus	19.67	40.34
VIT_07s0031g00440.t01	Wine grape	nucleus	29.1	32.27
VIT_18s0001g02280.t01	Wine grape	nucleus	17.62	20.77
Solyc09g007620.1.1	Tomato	nucleus	12.7	17.71
PGSC0003DMT400095772	Potato	cytosol	13.11	17.2
VIT_06s0004g01930.t01	Wine grape	nucleus	17.62	17.06
VIT_12s0028g01220.t01	Wine grape	nucleus	14.75	16.44
VIT_17s0000g03210.t01	Wine grape	nucleus	23.36	15.36
VIT_01s0011g04080.t01	Wine grape	nucleus	21.31	14.81
VIT_13s0064g01030.t01	Wine grape	nucleus	14.75	14.57
VIT_10s0042g00580.t01	Wine grape	nucleus	16.39	12.99
VIT_03s0063g00160.t01	Wine grape	nucleus	36.07	11.99
VIT_18s0001g10260.t01	Wine grape	nucleus	34.43	11.44
VIT_08s0040g02160.t01	Wine grape	nucleus	25.41	11.36
VIT_19s0014g01850.t01	Wine grape	nucleus	25.0	11.34
VIT_03s0088g00930.t01	Wine grape	nucleus, plastid	18.03	11.2
VIT_13s0019g04100.t01	Wine grape	extracellular	25.41	10.97
VIT_04s0008g02390.t01	Wine grape	nucleus	23.77	10.55
VIT_03s0097g00680.t01	Wine grape	nucleus	17.21	9.98
VIT_03s0088g01090.t01	Wine grape	nucleus	18.44	9.85

Protein Annotations

EntrezGene:100247468	wikigene:100247468	Gene3D:3.30.40.10	MapMan:35.1	ProteinID:CBI21405	ProteinID:CBI21405.3
UniProt:D7SVV6	EMBL:FN595233	GO:GO:0003674	GO:GO:0003824	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
GO:GO:0043161	GO:GO:0061630	InterPro:IPR001841	InterPro:IPR013083	EntrezGene:LOC100247468	wikigene:LOC100247468
PFAM:PF13639	PFscan:PS50089	PANTHER:PTHR14155	PANTHER:PTHR14155:SF464	SMART:SM00184	SUPFAM:SSF57850
UniParc:UPI0001983B1E	ArrayExpress:VIT_07s0031g00390	EnsemblPlantsGene:VIT_07s0031g00390	EnsemblPlants:VIT_07s0031g00390.t01	RefSeq:XP_002278073	RefSeq:XP_002278073.1
RefSeq:XP_010652802.1	RefSeq:XP_010652803.1	RefSeq:XP_019076474.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

No Description!

Coordinates

chr7:-:16615612..16618016

Molecular Weight (calculated)

26720.3 Da

IEP (calculated)

4.230

GRAVY (calculated)

-0.740

Length

244 amino acids

Sequence
(BLAST)

001: MEGDERRQGS SSHDPTLERR APDSGGLTST DQLHEESTSN ASLNSATCGV GTTEASSTLA GPSLAAEAGE VLVSSTRQRT APSDQENLVD NAMGLQDHGS
101: TIQFRSHTRV PGHWWLLGVI YQDVEDEDYE DDSDDSDDSE DDMHLVNDNT SYGELRELGE HIGNVSNGLR EEVIMAKLKR HKYSCSTMGY PVDAETCCIC
201: QEEYADDEDV GKLDCGHEYH VVCIKEWLSK KNSCPICKKT ALAA

Best Arabidopsis Sequence Match ( AT4G34040.1 )
(BLAST)

001: MQGPRSTGDS STGINYADGE PICSTNSETT SNNILNPVDV QFPNNTTGSG RPTYASSSSH VVQNHNWWSF GESSSRLGPS DHLNSNGSKT DRQLLSDGYG
101: FEEGQSGMLL PGESFLRGSS SSHMLSHVNL GKDMDIGSGL QTSGVVIRHN NCETSLGSSS QTAEERSSGP GSSLGGLGSS CKRKALEGAP SHSFPGESHG
201: CFFQTENGAW NEGLAQYDAS SSLSLSMPSQ NSPNVNNQSG LPEPRFGLGG GRAVTASAFP STRSTETISR PGRRLNPGQP PESVAFSFTQ SGSSVRQQQQ
301: LPATSPFVDP LDARAIPVTG SSSSGDGQPS MIHLPALTRN IHQFAWSASS SSRANSMPEE GLSPWDAPRI NSEQPVFTTP ANETRNPVQD QFCWSFTRGN
401: PSTSGDSPFV PRAGSSSGIH GLQPNPTWVT PHNQSRISEV APWSLFPSIE SESATHGASL PLLPTGPSVS SNEAAAPSGS SSRSHRSRQR RSGLLLERQN
501: DHLHLRHLGR SLAADNDGRN RLISEIRQVL SAMRRGENLR FEDYMVFDPL IYQGMAEMHD RHRDMRLDVD NMSYEELLAL GERIGDVSTG LSEEVILKVM
601: KQHKHTSSAA GSHQDMEPCC VCQEEYAEGD DLGTLGCGHE FHTACVKQWL MLKNLCPICK TVALST

Arabidopsis Description

MBR2E3 ubiquitin-protein ligase MBR2 [Source:UniProtKB/Swiss-Prot;Acc:O49500]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.