Factsheet for VIT_13s0019g04100.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 5
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4
mitochondrion 1
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_16s0022g00290.t01	Wine grape	nucleus	12.57	93.42
GSMUA_AchrUn_...	Banana	nucleus	10.97	55.36
VIT_07s0031g00400.t01	Wine grape	cytoskeleton, cytosol, nucleus	9.38	51.96
VIT_08s0040g02160.t01	Wine grape	nucleus	46.9	48.53
VIT_07s0031g00380.t01	Wine grape	cytosol	5.31	42.86
VIT_07s0031g00370.t01	Wine grape	mitochondrion	10.97	42.76
VIT_11s0118g00640.t01	Wine grape	nucleus	8.67	41.18
CDY55435	Canola	nucleus	34.87	37.31
CDX79718	Canola	nucleus	33.81	35.97
CDY68424	Canola	nucleus	34.16	35.94
Bra023101.1-P	Field mustard	nucleus	33.63	35.65
Bra017205.1-P	Field mustard	nucleus	33.63	35.38
CDY46757	Canola	nucleus	32.74	34.71
AT2G37150.3	Thale cress	endoplasmic reticulum, extracellular	34.87	32.89
GSMUA_Achr5P08460_001	Banana	nucleus	31.5	31.01
VIT_07s0031g00440.t01	Wine grape	nucleus	10.27	26.36
VIT_07s0031g00390.t01	Wine grape	nucleus	10.97	25.41
VIT_19s0014g01850.t01	Wine grape	nucleus	23.72	24.91
VIT_18s0001g02280.t01	Wine grape	nucleus	8.85	24.15
VIT_12s0028g01220.t01	Wine grape	nucleus	8.67	22.37
VIT_01s0011g04080.t01	Wine grape	nucleus	13.81	22.22
VIT_03s0088g00930.t01	Wine grape	nucleus, plastid	15.22	21.88
GSMUA_Achr11P...	Banana	cytosol, nucleus, peroxisome	19.65	21.68
VIT_06s0004g01930.t01	Wine grape	nucleus	9.56	21.43
VIT_03s0088g01090.t01	Wine grape	nucleus	16.81	20.79
EES00281	Sorghum	nucleus	18.94	20.78
VIT_03s0097g00680.t01	Wine grape	nucleus	15.4	20.67
Os01t0159300-01	Rice	nucleus	18.23	20.56
VIT_10s0042g00580.t01	Wine grape	nucleus	11.15	20.45
TraesCS1D01G111500.1	Wheat	nucleus	19.29	20.34
VIT_13s0064g01030.t01	Wine grape	nucleus	8.85	20.24
TraesCS1B01G129600.1	Wheat	nucleus	19.11	20.22
TraesCS1A01G107600.1	Wheat	nucleus	19.11	20.11
HORVU1Hr1G024190.2	Barley	nucleus	18.94	19.93
Zm00001d008649_P003	Maize	cytosol	18.58	19.92
Os05t0163400-03	Rice	nucleus	18.58	19.7
VIT_17s0000g03210.t01	Wine grape	nucleus	12.92	19.68
EES19093	Sorghum	nucleus	18.58	19.52
Zm00001d039769_P002	Maize	cytosol	18.94	19.42
TraesCS3D01G105300.1	Wheat	cytosol	17.17	18.73
TraesCS3B01G120600.2	Wheat	cytosol	16.81	18.34
TraesCS3A01G103000.1	Wheat	nucleus	16.28	17.73
VIT_04s0008g02390.t01	Wine grape	nucleus	16.46	16.91
HORVU3Hr1G018800.2	Barley	cytosol, plastid	16.81	16.13
VIT_18s0001g10260.t01	Wine grape	nucleus	20.0	15.4
VIT_03s0063g00160.t01	Wine grape	nucleus	18.58	14.31

Protein Annotations

EntrezGene:100249661	wikigene:100249661	Gene3D:3.30.40.10	MapMan:35.1	ProteinID:CCB56196	ProteinID:CCB56196.1
UniProt:F6HNH7	EMBL:FN595998	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	InterPro:IPR001841
InterPro:IPR013083	EntrezGene:LOC100249661	wikigene:LOC100249661	PFAM:PF13639	PFscan:PS50089	PANTHER:PTHR22937
PANTHER:PTHR22937:SF74	SMART:SM00184	SUPFAM:SSF57850	SignalP:SignalP-noTM	UniParc:UPI000210A175	ArrayExpress:VIT_13s0019g04100
EnsemblPlantsGene:VIT_13s0019g04100	EnsemblPlants:VIT_13s0019g04100.t01	unigene:Vvi.12278	RefSeq:XP_002274580	RefSeq:XP_002274580.2	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	:	:	:	:	:

Description

No Description!

Coordinates

chr13:-:5376959..5389168

Molecular Weight (calculated)

63183.9 Da

IEP (calculated)

6.903

GRAVY (calculated)

-0.634

Length

565 amino acids

Sequence
(BLAST)

001: MIGPLQMRLV FHLPFLLTFE AMGHRYFTNS FQMSVADQDQ NQYHMDAYQS YIHSGRAVDP VYGSYVHQME NALTSGVSSA FPRNLNCGTN EHSLSSFSMQ
101: RPCFQAAVPG PSHDPFSHLS AAGTFYRTQE NNASHAHSTY YNRSTIHEVE GGSQDPAVQN SRGPFKRKSP SISIAYERGI PSRFYDAGSS SGFSEFHLDK
201: PTLDYQNYFY GPGLSHYGAS SLSISGEASL RNVRRRSRFE WEPNRTTGHL SSYSSHYYCP TTNLINHSSR VDLANLTANS TTYERSHTAV PPAGYGRFLN
301: SETNGLSHET DRFVVGRSTV DISGYHHGSV SSRFPISLPQ YLHGLSGQSV REGHSSYSQR FIPSYRSGLS YPHLGHEAAH SENGLQFPSE TFSSRYPRPS
401: AASGWRNSYR NERSRIASER YQSLSNAADT HAQMESEAVI MVDSSSLYGS RNLFDQYGDM RLDIDDMSYE ELLALGESIG NVSTGLSEDM VSKCLTKTTY
501: HSSDQNQEEA MCTICLEEYK SKEEVGRMKN CGHDYHVGCI RKWLSLKNFC AICKAPALAD GLKEE

Best Arabidopsis Sequence Match ( AT2G37150.3 )
(BLAST)

001: MLVPHVSPLG LVAGLSLMYS DLRIVLWTFL VDWESKANLN SSHLEVILIH RGLMGHRHFL GSSQFFDDEH DQGWNHTHPE HPYSSQATSG TSENRSHVYP
101: AENMLNEGMP VSSHWNSSPG PNAYTDSGHS VERPHYNPGV SGPSHDPSVN STVPTFSAPH ENYVTFASSS SYNSQTWSNA SYVDHQSMES VRGAQKRKRP
201: CPSSIYEMGS SSQYHGDRTP ADTHFPSELH LGKSITHDHD PHYMPWLMNP TYRSNNLSIR GESSSRNVRS RPTLDSETSL GRNNLPRSLS LDSHSTHHHS
301: VDHYGSGQFP GQTSHGNKDW NCARLSPVLR DINGFSPETN NFLPARSVVN SLSVNTSGYH HHELTGNRNP TVSHGVPGTS TLSTSSSRFS HRSTSTYRSS
401: SHGSRSGHVA SSSGDRSHLV TETYPSRHLR PPPHISWRSG DRPGRRRSSY ERFQPPFDEV ALHERFSSEE FMVEDRQPQY YGSRNMLDHH RDMRLDIDNM
501: SYEELLDLGE RIGSVNTGLS DSAISSCLLA TMYYPSYQTE EQRKCAICLE EYKEKEELGE VKGCGHDYHG RCIKKWLSMK NSCPICKSPA LPDASKNSS

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IQ07]
SUBAcon: [endoplasmic reticulum,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.