Factsheet for HORVU1Hr1G024190.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G111500.1	Wheat	nucleus	94.23	94.4
TraesCS1B01G129600.1	Wheat	nucleus	93.67	94.19
TraesCS1A01G107600.1	Wheat	nucleus	93.67	93.67
Os05t0163400-03	Rice	nucleus	73.93	74.48
EES19093	Sorghum	nucleus	64.25	64.13
GSMUA_AchrUn_...	Banana	nucleus	9.5	45.54
VIT_16s0022g00290.t01	Wine grape	nucleus	5.77	40.79
HORVU3Hr1G018800.2	Barley	cytosol, plastid	42.46	38.71
HORVU3Hr1G054920.1	Barley	cytosol	6.15	35.87
HORVU5Hr1G080540.5	Barley	nucleus	7.26	22.67
KRH32434	Soybean	nucleus	22.16	22.08
KRH19845	Soybean	nucleus	21.97	21.45
CDY55435	Canola	nucleus	20.3	20.64
Bra023101.1-P	Field mustard	nucleus	20.48	20.64
KRG95955	Soybean	nucleus	20.86	20.4
CDY68424	Canola	nucleus	20.3	20.3
Solyc09g007530.2.1	Tomato	nucleus	20.48	20.3
PGSC0003DMT400004449	Potato	nucleus	20.48	20.3
CDY46757	Canola	nucleus	20.11	20.26
CDX79718	Canola	nucleus	19.93	20.15
VIT_08s0040g02160.t01	Wine grape	nucleus	20.48	20.15
KRH67668	Soybean	nucleus	20.67	20.15
Bra017205.1-P	Field mustard	nucleus	20.11	20.11
HORVU2Hr1G101370.5	Barley	nucleus	13.97	20.0
HORVU3Hr1G064370.1	Barley	plastid	13.78	19.22
GSMUA_Achr11P...	Banana	cytosol, nucleus, peroxisome	18.25	19.14
VIT_13s0019g04100.t01	Wine grape	extracellular	19.93	18.94
HORVU3Hr1G061010.4	Barley	nucleus	18.44	18.82
GSMUA_Achr5P08460_001	Banana	nucleus	19.55	18.29
HORVU7Hr1G009940.2	Barley	nucleus	8.01	18.07
AT2G37150.3	Thale cress	endoplasmic reticulum, extracellular	19.93	17.86
HORVU2Hr1G113970.2	Barley	cytosol, nucleus	18.62	17.3
HORVU1Hr1G082970.1	Barley	plastid	12.1	17.24
HORVU1Hr1G087900.1	Barley	cytosol	16.39	16.92
HORVU2Hr1G094980.4	Barley	cytosol	8.01	16.23
HORVU2Hr1G113930.2	Barley	nucleus	19.18	15.75
HORVU7Hr1G057310.5	Barley	cytosol, nucleus, plastid	8.57	15.38
HORVU5Hr1G082790.2	Barley	nucleus	9.5	14.74
HORVU7Hr1G098540.1	Barley	nucleus	16.01	14.68
Bra028576.1-P	Field mustard	cytosol	7.26	13.78
HORVU2Hr1G003340.5	Barley	nucleus	17.69	13.46
HORVU4Hr1G055690.5	Barley	peroxisome, plastid	8.57	13.07
HORVU6Hr1G022370.10	Barley	mitochondrion	15.46	11.94
Bra036336.1-P	Field mustard	nucleus	8.75	9.34
CDY47948	Canola	nucleus	8.75	9.34
HORVU3Hr1G054870.1	Barley	cytosol, mitochondrion	5.03	6.29

Protein Annotations

EnsemblPlants:HORVU1Hr1G024190.2	EnsemblPlantsGene:HORVU1Hr1G024190	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR22937	PANTHER:PTHR22937:SF45	PFAM:PF13639	PFscan:PS50089	SEG:seg
SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0002957C26	UniProt:M0YNS0	MapMan:35.1	:

Description

No Description!

Coordinates

chrchr1H:-:108242443..108251272

Molecular Weight (calculated)

58405.7 Da

IEP (calculated)

7.554

GRAVY (calculated)

-0.736

Length

537 amino acids

Sequence
(BLAST)

001: MAGHHYHNSQ MSRMDRMNQP RNEPPPFGQK LFMHPRGDAP NGAGPSGFGG TTVRSNELPS SSYTGQSYGQ QIGAPGTLHA SNAGYPPAGS SSSNYAPYNT
101: QHVPSLSYPH RSEDSFIPGV HVDDRRVAPK RRNPITHPVD GVSAGGYYPG SSSNNQFSGY IPLNPVPTRE TCPPQISSNM GSSHWNDHQF VNPEGSQRNV
201: RGRHDHSSIH SEYNSSTTCP SSSIHVPPYH PNANAPFGSA PVQRERAPLS LPPRIVPPGT DGSTGIAFRE RPYYPAPQGT NISAPVPTLP GSSDGAPFAR
301: IGYTPRPVHH NTGHNYSPPA FTTSSISGAV RCEPANPRYQ PAIPSYPPAT SAASSSVQPL HAEAGASFRQ PRHVSVGHGG SARSRRMRDS YHCFHPLMIE
401: DNNLGRSAAE RFMMLDQLVI HESREALDPH WDMRLDIDDM SYEELLALEE RIGSVNTGLA DEKISGCVME LACHSSARTQ NDQNNERCII CLEEYKQKDS
501: LGKLKCGHDF HAGCIKKWLE VKNACPVCKA DAANETT

Best Arabidopsis Sequence Match ( AT2G15530.1 )
(BLAST)

001: MNPMQGPRSI GGSSTEVNQV DGESIYCTET SLNTMLNPAD TGFPNNSTPS GRPTYASSSS HAAQDHTWWR FGESSSIPGP SDQVNSIGIK TSHQLPQDGT
101: HHFVGYGSEG RQTGLNGMMV DGGVHAGSHI RNVPSFLRGS SSNPMPQHVD MSMDMDSDNC NAQTSGVVIR HNSYGSSLGS SVQAAGESSS GPASPFGGWG
201: SSCKRKALEG SPSHYFSGET PNRIVQTENS ASHASLSQYG ASSSLSLATP SQSSPNVTNH FGRTEQMFGS GGGRAVAASA FHSTRNTDTL SRAGRRLNPR
301: QPQESVAFSV SHGGTSVRPT GSLQQNLPLN SPFVDPPDVR SSSITSGSNT GENQTNIVHL PALTRNIHQY AWDASFSSRA SNPSGIGMPA ERLGPQWETP
401: RSNQEQPLFA PATDMRQPVH DLWNFARGSP GSSVDSLFVP RAGPSSAIHT PQPNPTWIPP QNAPPHNPSR TSELSPWSLF PSIESPSASH GGPLPLLPAG
501: PSVSSNEVTM PSSSNSRSHR SRHRRSGLLL ERQNELLHLR HIGRSLAADG NGRNQIISEI RQVLHAMRRG ENLRVEDYMV FDPLIYQGMT DMHDRHREMR
601: LDVDNMSYEE LLALGERIGD VSTGLSEEVI LKAMKQHKHT SSSPSSVELH QNIEPCCICQ EEYVEGDNLG TLKCGHEFHK DCIKQWVMIK NLCPICKTEA
701: LKTP

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IIG9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.