Factsheet for Bra023101.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY46757	Canola	nucleus	95.68	95.68
Bra017205.1-P	Field mustard	nucleus	78.61	78.03
AT2G37150.3	Thale cress	endoplasmic reticulum, extracellular	77.49	68.95
VIT_16s0022g00290.t01	Wine grape	nucleus	7.88	55.26
GSMUA_AchrUn_...	Banana	nucleus	10.32	49.11
Bra024009.1-P	Field mustard	nucleus	11.07	33.71
VIT_13s0019g04100.t01	Wine grape	extracellular	35.65	33.63
Bra019499.1-P	Field mustard	nucleus	8.82	28.66
GSMUA_Achr5P08460_001	Banana	nucleus	28.89	26.83
Bra024007.1-P	Field mustard	nucleus	19.89	22.7
GSMUA_Achr11P...	Banana	cytosol, nucleus, peroxisome	21.58	22.46
Bra040450.1-P	Field mustard	nucleus	9.94	21.9
Bra027467.1-P	Field mustard	nucleus	16.32	21.22
HORVU1Hr1G024190.2	Barley	nucleus	20.64	20.48
Os05t0163400-03	Rice	nucleus	20.26	20.26
TraesCS1B01G129600.1	Wheat	nucleus	20.26	20.22
Os01t0159300-01	Rice	nucleus	18.95	20.16
TraesCS1D01G111500.1	Wheat	nucleus	20.26	20.15
TraesCS1A01G107600.1	Wheat	nucleus	20.26	20.11
Bra003830.1-P	Field mustard	nucleus, plastid	12.76	20.06
Bra038109.1-P	Field mustard	nucleus	18.01	20.0
Bra039659.1-P	Field mustard	nucleus	17.26	20.0
Zm00001d008649_P003	Maize	cytosol	19.7	19.92
EES00281	Sorghum	nucleus	19.14	19.81
Zm00001d039769_P002	Maize	cytosol	20.26	19.6
EES19093	Sorghum	nucleus	19.51	19.33
Bra015967.1-P	Field mustard	nucleus	12.2	18.21
Bra016574.1-P	Field mustard	nucleus	12.2	18.16
Bra027282.1-P	Field mustard	nucleus	15.01	17.98
TraesCS3B01G120600.2	Wheat	cytosol	17.45	17.95
TraesCS3D01G105300.1	Wheat	cytosol	17.26	17.76
Bra038240.1-P	Field mustard	nucleus	10.88	17.42
TraesCS3A01G103000.1	Wheat	nucleus	16.89	17.34
Bra022466.1-P	Field mustard	nucleus	10.51	17.28
Bra022580.1-P	Field mustard	cytosol	5.82	17.22
Bra001582.1-P	Field mustard	nucleus	14.07	17.16
Bra033652.1-P	Field mustard	nucleus	19.7	17.07
Bra006070.1-P	Field mustard	nucleus	15.76	16.97
Bra039842.1-P	Field mustard	nucleus	18.57	16.58
Bra015221.1-P	Field mustard	nucleus	18.39	16.42
Bra009015.1-P	Field mustard	plastid	16.32	16.32
Bra014043.1-P	Field mustard	nucleus	16.89	15.62
HORVU3Hr1G018800.2	Barley	cytosol, plastid	16.51	14.94
Bra022579.1-P	Field mustard	cytosol	3.38	13.64
Bra009800.1-P	Field mustard	nucleus	9.57	12.44
Bra028293.1-P	Field mustard	nucleus	4.88	10.88
Bra036336.1-P	Field mustard	nucleus	10.13	10.74
Bra028576.1-P	Field mustard	cytosol	4.69	8.83

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	EnsemblPlantsGene:Bra023101	EnsemblPlants:Bra023101.1	EnsemblPlants:Bra023101.1-P	GO:GO:0003674
GO:GO:0005488	GO:GO:0008270	GO:GO:0046872	InterPro:IPR001841	InterPro:IPR011016	InterPro:IPR013083
UniProt:M4E2V0	PFAM:PF13639	PFscan:PS50089	PANTHER:PTHR22937	PANTHER:PTHR22937:SF47	SMART:SM00184
SMART:SM00744	SUPFAM:SSF57850	UniParc:UPI000253FF8F	InterPro:Znf_RING	InterPro:Znf_RING-CH	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

AT2G37150 (E=1e-112) | zinc finger (C3HC4-type RING finger) family protein

Coordinates

chrA03:-:8696822..8699044

Molecular Weight (calculated)

59191.6 Da

IEP (calculated)

6.812

GRAVY (calculated)

-0.872

Length

533 amino acids

Sequence
(BLAST)

001: MGHRHFPGSS QFFDDDEHDQ GWNHIHPEHP YTSLERSGTS ENNRPHAYLA ENLLSEGVPV SSHWNSSIGP SAYTAPVHGV ERPHYNPGTS GPSHVPFMSS
101: AVATFSAPHE TYVTSASSSN CNSHTWSNDS YSDLPMENMR GSLKRKAPYD SSIYEMGSSS QYHGDIASSD MHFPSELHMG KSITHDHDPH YMPWLMDPTH
201: RSNNLSIRGE SSSRNVRSRP TLDLETGLDS HPTHHNVEHP SSGQFPGQAS HRDKEWNYPR LSPVPGGING FSPETSNFLP ARSVVNNTSG DTSGYHQGIT
301: GNRNSAASHC FPGTSTQSAS SSRFSHRSTP TYRASSNGLR LGHVASSSSD RSHFVNETYP SRHLRPPPHI SWRSSGRPGR RRSSYERFQP PFDEAALHER
401: FSSQGFMVVD HHLQHGSRNM LDHHRDMRLD IDDMTYEELL ALGERIGSVN TGLSNNAISS CLSETAYYPL YQTDEQRKCA ICLEEYVEGE ELGELKGCGH
501: DYHGGCIKKW LSMKNSCPIC KAPAIPDASS KNP

Best Arabidopsis Sequence Match ( AT2G37150.14 )
(BLAST)

001: MRSEVYNMVG TCYKGLMGHR HFLGSSQFFD DEHDQGWNHT HPEHPYSSQA TSGTSENRSH VYPAENMLNE GMPVSSHWNS SPGPNAYTDS GHSVERPHYN
101: PGVSGPSHDP SVNSTVPTFS APHENYVTFA SSSSYNSQTW SNASYVDHQS MESVRGAQKR KRPCPSSIYE MGSSSQYHGD RTPADTHFPS ELHLGKSITH
201: DHDPHYMPWL MNPTYRSNNL SIRGESSSRN VRSRPTLDSE TSLGRNNLPR SLSLDSHSTH HHSVDHYGSG QFPGQTSHGN KDWNCARLSP VLRDINGFSP
301: ETNNFLPARS VVNSLSVNTS GYHHHELTGN RNPTVSHGVP GTSTLSTSSS RFSHRSTSTY RSSSHGSRSG HVASSSGDRS HLVTETYPSR HLRPPPHISW
401: RSGDRPGRRR SSYERFQPPF DEVALHERFS SEEFMVEDRQ PQYYGSRNML DHHRDMRLDI DNMSYEELLD LGERIGSVNT GLSDSAISSC LLATMYYPSY
501: QTEEQRKCAI CLEEYKEKEE LGEVKGCGHD YHGRCIKKWL SMKNSCPICK SPALPDASKN SS

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IQ07]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.